Extended Data Fig. 7: Performance of matching and integration on CODEX and CITE-seq murine spleen cells.
From: Robust single-cell matching and multimodal analysis using shared and distinct features
(A) Performance of matching and integration during the sequential dropping of shared protein features. (B) Testing algorithm stringency between different methods. Increasing amounts of random spike-in noise was added to the data, and the matching accuracy and proportion of cells matched to X were quantified. (C) Testing algorithm stringency among different methods. Single-cell types in Y were completely removed before matching to X. The proportion of cells belonging to the deleted cell type in matched X cells was used to calculate the erroneous avoidance score. (D) t-SNE plots visualizing pre-integration and post-integration results with different methods.
