Fig. 1: Overview of JIPipe.
Curtis Rueden (ImageJ logos in a,b), Johannes Schindelin (Fiji logo in b), Robert Haase (CLIJ logo in b), Jean-Marie Burel (Bio-Formats and OMERO logos in b), Carsen Stringer (cellpose logo in b), info@posit.co (R logo in b) and psf-trademarks@python.org (Python logo in b).
a, JIPipe is a visual programming language to realize code-free workflow building for ImageJ-based image analyses. GUI, graphical user interface. b, Currently, JIPipe unifies the functionality of over 1,000 ImageJ commands into a standardized interface, represented as nodes in the pipeline flow chart. The window-based data management implemented in ImageJ is replaced with a table-based model designed for batch processing. c, A range of applications showcases the versatility of JIPipe. Scale bars, 100 µm.
