Extended Data Fig. 8: Analysis of TCNs in breast cancer identified by the original study12.
From: Unsupervised and supervised discovery of tissue cellular neighborhoods from cell phenotypes
(a) Heatmaps of average enrichment scores of each cell type in each identified TCN across all tissue sections of low-risk and high-risk patient samples. Cell type enrichment score is defined as -log10(P-value). P-values were computed using hypergeometric tests and adjusted using Benjamini-Hochberg method. (b) Spearman’s rank correlation coefficient (Corr) of average cell type enrichment scores in all identified TCNs between low-risk and high-risk patients and the two-sided Spearman’s rho test p-value are shown.
