Extended Data Fig. 4: Illustration of the static plotting library spatialdata-plot. | Nature Methods

Extended Data Fig. 4: Illustration of the static plotting library spatialdata-plot.

From: SpatialData: an open and universal data framework for spatial omics

Extended Data Fig. 4

The spatialdata-plot library enables the streamlined visualization of complex multi-modality data. The set of elements to be rendered (Images, Labels, Points, Shapes), as well as specific parameters for plotted elements can be specified by the user. For example, Shapes representing cells can be annotated by the expression level of a target gene. The plotting library automatically accounts for transformations and alignments of the underlying common coordinate system. Tutorials how to use spatialdata-plot are available as part of the online documentation (Section ‘Visualizations’, https://spatialdata.scverse.org/en/latest/tutorials/notebooks/notebooks.html).

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