Extended Data Fig. 4: Interactive 3D visualization of tomogram embeddings from EMPIAR-10499.
From: MiLoPYP: self-supervised molecular pattern mining and particle localization in situ
a) 3D UMAP representation of protein embeddings colored according to labels assigned using over-clustering. Patches corresponding to clusters representing different species were isolated and selected using the ‘select’ button shown in a), including 70S ribosomes (b), membrane-like features (c), unidentified small-sized proteins (d), and circularly shaped vesicles (e). f) Low-resolution 3D reconstruction obtained from patches containing circularly shaped objects representing a hollow vesicle.
