Extended Data Fig. 6: Interactive 3D visualization of tomogram embeddings from EMPIAR-10987.
From: MiLoPYP: self-supervised molecular pattern mining and particle localization in situ
a) 3D UMAP representation of protein embeddings colored according to labels assigned using over-clustering. Patches corresponding to clusters representing different species were isolated and selected using the ‘select’ button shown in a), including microtubules (b), 80S ribosomes (c), membrane-like features (d), and other small proteins (e). f) Detection performance of ribosomes and microtubules measured using F1-scores. Each box extends from the first (Q1) to the third quartile (Q3). The median is marked by a line inside the box. Whisker lines correspond to box edges +/1.5 times the interquartile range (sample size is 10 for microtubules and 2 for ribosomes).
