Extended Data Fig. 5: A. thaliana variant calling performance. | Nature Methods

Extended Data Fig. 5: A. thaliana variant calling performance.

From: Building pangenome graphs

Extended Data Fig. 5

Precision, recall, and F1-score of small variants in the A. thaliana pangenome graph relative to HiFi–DeepVariant calls. Comparisons are made whole-genome and then stratified by genomic context. Easy and Hard regions exclude and include, respectively, rDNA, centromere, and Trasposable Elements. The 64 samples evaluated are colored by population. The low precision for Lor-16 and Met-6 is due to the high heterozygosity of these 2 samples.

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