Fig. 2: STAMP accurately identifies biologically relevant topics in Slide-seq V2 mouse hippocampus.
From: Interpretable spatially aware dimension reduction of spatial transcriptomics with STAMP
a, Allen Mouse Brain Atlas reference with the hippocampus region annotated. b, Boxplots of module coherence and module diversity scores of STAMP and the five competing methods obtained over five different runs with different seeds. In the box plot, the center line denotes the median, box limits denote the upper and lower quartiles and whiskers denote 1.5 × interquartile range. c, Selected spatial topics related to the hippocampus as captured by the methods. Topics were binarized for ease of visualization. d, Gene module rankings (number) and scores (color) of known gene markers for the different hippocampus regions. e, Visualization of the spatial topics identified by STAMP and expression levels of the corresponding highest-ranking genes from each gene module.
