Fig. 5: STAMP removes batch effects.
From: Interpretable spatially aware dimension reduction of spatial transcriptomics with STAMP
a, Annotated 4,6-diamidino-2-phenylindole (DAPI) stained image illustrating the mouse olfactory bulb’s laminar organization. b, UMAPs computed using the latent space/topics returned by every method. The UMAPs are colored by their respective technology. c, Table displaying the scIB metrics computed for each method. A score of 1 indicates optimal performance. d, Gene module rankings (number) and scores (color) of marker genes returned by STAMP for each topic. e, Identified topics of different olfactory layers in the 10x Genomics Visium, Stereo-seq and Slide-seq V2 data. f, Dataset of 12 DLPFC slices with the original annotation. g, Table displaying the scIB metrics and aggregate scores computed for each method. A score of 1 indicates optimal performance.
