Extended Data Fig. 7: Variation of the predicted and observed expression values. | Nature Methods

Extended Data Fig. 7: Variation of the predicted and observed expression values.

From: Deep-learning-based gene perturbation effect prediction does not yet outperform simple linear baselines

Extended Data Fig. 7

Histogram of the standard deviation per gene for the predicted and observed expression values across perturbations facetted by the model. The red vertical bar indicates the mean of the standard deviations for the ground truth for (a) the Norman dataset and (b) the Replogle K562 dataset. The data reflects the variation for the 1 000 most highly expressed genes and is aggregated across five test-training splits. LM: linear model.

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