Table 2 ATAC-seq metadata and mapping statistics.
From: An ATAC-seq atlas of chromatin accessibility in mouse tissues
Sample ID | Total Reads | Mapped Reads* | chrM Reads | Usable Reads* | Percentage of Usable Reads | TSS Enrichment | IDR Peaks |
|---|---|---|---|---|---|---|---|
ATAC-1 | 98,303,382 | 96,954,685 | 23,288,521 | 16,098,792 | 16.38 | 17.21 | 23,296 |
ATAC-2 | 148,416,230 | 146,416,001 | 25,259,955 | 24,542,678 | 16.54 | 17.83 | 23,296 |
ATAC-3 | 150,254,776 | 148,205,698 | 1,773,531 | 116,676,430 | 77.65 | 18.35 | 93,546 |
ATAC-4 | 132,170,414 | 130,467,930 | 1,749,710 | 108,546,212 | 82.13 | 19.17 | 93,546 |
ATAC-5 | 44,251,998 | 43,732,156 | 254,745 | 35,315,756 | 79.81 | 13.90 | 32,337 |
ATAC-5 | 180,555,698 | 178,313,881 | 2,085,323 | 136,439,604 | 75.57 | 14.51 | 32,337 |
ATAC-7 | 170,643,536 | 166,598,249 | 1,204,915 | 61,090,112 | 35.80 | 13.03 | 28,827 |
ATAC-8 | 165,896,236 | 135,431,464 | 1,175,420 | 61,493,964 | 37.07 | 12.63 | 28,827 |
ATAC-9 | 134,023,704 | 129,656,384 | 14,098,291 | 49,198,612 | 36.71 | 16.75 | 66,620 |
ATAC-10 | 160,942,400 | 156,016,214 | 13,541,729 | 59,910,266 | 37.22 | 16.71 | 66,620 |
ATAC-11 | 157,502,400 | 154,297,472 | 1,228,888 | 93,224,318 | 59.19 | 8.10 | 34,851 |
ATAC-12 | 162,615,494 | 159,625,229 | 1,252,759 | 103,453,218 | 63.62 | 7.44 | 34,851 |
ATAC-13 | 238,728,090 | 229,371,653 | 14,280,715 | 116,609,704 | 48.85 | 7.82 | 38,875 |
ATAC-14 | 268,182,264 | 259,270,286 | 18,497,755 | 132,829,548 | 49.53 | 7.11 | 38,875 |
ATAC-15 | 90,269,090 | 88,799,485 | 1,190,916 | 67,126,022 | 74.36 | 13.93 | 57,348 |
ATAC-16 | 108,421,198 | 106,752,478 | 1,697,128 | 77,533,954 | 71.51 | 13.54 | 57,348 |
ATAC-17 | 137,779,770 | 135,420,287 | 647,765 | 103,420,718 | 75.06 | 7.56 | 49,444 |
ATAC-18 | 138,236,344 | 135,957,141 | 603,586 | 103,420,718 | 74.81 | 7.24 | 49,444 |
ATAC-19 | 181,243,756 | 178,738,131 | 1,480,812 | 135,096,206 | 74.54 | 12.98 | 74,408 |
ATAC-20 | 123,570,800 | 121,933,521 | 1,153,158 | 96,071,108 | 77.75 | 13.55 | 74,408 |
ATAC-21 | 110,371,234 | 109,170,446 | 3,960,686 | 63,119,950 | 57.19 | 13.61 | 22,300 |
ATAC-22 | 39,326,846 | 38,875,707 | 1,497,720 | 24,585,734 | 62.52 | 17.13 | 22,300 |
ATAC-23 | 35,838,048 | 34,832,716 | 153,844 | 25,314,950 | 70.64 | 12.88 | 37,012 |
ATAC-24 | 107,196,410 | 104,421,905 | 523,370 | 76,018,760 | 70.92 | 12.55 | 37,012 |
ATAC-25 | 133,254,164 | 131,716,403 | 2,973,082 | 63,522,884 | 47.67 | 6.39 | 16,386 |
ATAC-26 | 166,638,990 | 164,664,788 | 3,405,553 | 75,588,356 | 45.36 | 6.04 | 16,386 |
ATAC-27 | 94,226,804 | 93,372,274 | 697,988 | 58,659,642 | 62.25 | 7.55 | 18,659 |
ATAC-28 | 106,958,878 | 106,110,973 | 727,572 | 74,085,722 | 69.27 | 7.75 | 18,659 |
ATAC-29 | 70,619,572 | 69,042,929 | 629,068 | 49,965,476 | 70.75 | 11.87 | 35,092 |
ATAC-30 | 89,598,654 | 87,444,974 | 844,626 | 62,271,590 | 69.50 | 11.50 | 35,092 |
ATAC-31 | 66,931,470 | 66,424,809 | 200,619 | 50,479,508 | 75.42 | 5.71 | 12,249 |
ATAC-32 | 90,829,474 | 74,837,342 | 286,587 | 68,853,698 | 75.81 | 6.24 | 12,249 |
ATAC-33 | 98,233,400 | 94,112,150 | 4,507,302 | 23,763,636 | 24.19 | 15.52 | 24,953 |
ATAC-34 | 214,082,112 | 198,861,218 | 14,028,173 | 40,427,112 | 18.88 | 21.83 | 24,953 |
ATAC-35 | 84,715,186 | 83,692,447 | 5,340,505 | 39,154,858 | 46.22 | 9.15 | 21,940 |
ATAC-36 | 212,395,310 | 209,869,802 | 16,551,961 | 79,600,948 | 37.48 | 9.98 | 21,940 |
ATAC-37 | 235,561,686 | 191,218,996 | 4,553,350 | 155,453,764 | 65.99 | 25.43 | 117,909 |
ATAC-38 | 191,218,996 | 188,304,479 | 3,834,757 | 130,871,008 | 68.44 | 25.58 | 117,909 |
ATAC-39 | 53,952,860 | 53,152,913 | 981,941 | 41,135,886 | 76.24 | 15.42 | 41,280 |
ATAC-40 | 158,893,266 | 156,816,876 | 2,293,222 | 107,582,560 | 67.71 | 19.42 | 41,280 |
ATAC-41 | 173,258,824 | 166,021,269 | 19,132,852 | 24,004,880 | 13.85 | 17.70 | 43,306 |
ATAC-42 | 136,328,522 | 132,274,503 | 11,522,990 | 45,461,724 | 33.35 | 17.81 | 43,306 |
ATAC-43 | 155,269,780 | 151,746,361 | 1,090,769 | 100,616,020 | 64.80 | 8.65 | 41,494 |
ATAC-44 | 202,037,768 | 198,044,341 | 1,146,229 | 136,190,834 | 67.41 | 9.22 | 41,494 |
ATAC-45 | 157,868,844 | 154,946,940 | 21,384,649 | 61,621,604 | 39.03 | 8.34 | 31,248 |
ATAC-46 | 136,265,518 | 133,201,038 | 13,707,672 | 55,085,754 | 40.43 | 8.77 | 31,248 |
ATAC-47 | 125,102,346 | 123,612,014 | 6,647,001 | 78,928,576 | 63.09 | 9.93 | 54,282 |
ATAC-48 | 59,245,938 | 58,534,297 | 3,079,504 | 39,391,956 | 66.49 | 9.89 | 54,282 |
ATAC-49 | 119,605,280 | 118,172,060 | 549,819 | 83,043,494 | 69.43 | 12.31 | 30,671 |
ATAC-50 | 126,897,090 | 125,503,611 | 556,836 | 90,393,490 | 71.23 | 11.70 | 30,671 |
ATAC-51 | 75,598,616 | 74,377,104 | 2,570,404 | 54,471,070 | 72.05 | 19.32 | 74,760 |
ATAC-52 | 128,285,640 | 126,411,530 | 4,825,675 | 87,433,334 | 68.16 | 17.13 | 74,760 |
ATAC-53 | 206,730,874 | 202,279,412 | 2,800,887 | 146,461,186 | 70.85 | 13.31 | 78,775 |
ATAC-54 | 194,636,430 | 190,999,768 | 3,353,166 | 140,032,146 | 71.95 | 13.07 | 78,775 |
ATAC-55 | 108,547,670 | 107,297,270 | 1,127,842 | 78,808,372 | 72.60 | 13.78 | 64,002 |
ATAC-56 | 156,741,782 | 155,063,216 | 1,616,305 | 113,767,728 | 72.58 | 13.15 | 64,002 |
ATAC-57 | 91,983,866 | 89,773,673 | 819,185 | 65,257,644 | 70.94 | 17.81 | 54,658 |
ATAC-58 | 238,980,976 | 232,982,918 | 3,255,911 | 162,801,402 | 68.12 | 16.01 | 54,658 |
ATAC-59 | 117,557,552 | 115,960,450 | 1,920,255 | 44,835,398 | 38.14 | 6.32 | 14,722 |
ATAC-60 | 214,824,060 | 211,626,739 | 2,469,962 | 42,681,444 | 19.87 | 9.52 | 14,722 |
ATAC-61 | 96,385,558 | 95,252,958 | 708,544 | 63,986,222 | 66.39 | 11.09 | 21,189 |
ATAC-62 | 99,268,666 | 98,104,994 | 736,929 | 67,856,328 | 68.36 | 11.95 | 21,189 |
ATAC-63 | 146,138,130 | 144,325,578 | 1,901,264 | 96,815,264 | 66.25 | 10.05 | 34,443 |
ATAC-64 | 53,691,468 | 52,961,106 | 1,045,366 | 37,522,232 | 69.88 | 13.43 | 34,443 |
ATAC-65 | 108,290,790 | 106,397,126 | 1,095,779 | 78,782,088 | 72.75 | 14.54 | 42,037 |
ATAC-66 | 131,298,716 | 128,823,646 | 1,286,797 | 93,295,128 | 71.06 | 14.16 | 42,037 |
