Table 2 Statistics of Illumina-based RNA-seq data and quantification of gene expression.
From: Transcriptomic profiles of 33 opium poppy samples in different tissues, growth phases, and cultivars
Sample | Index | Clean Bases | Q30 Rate (%) | RPKM | |||
|---|---|---|---|---|---|---|---|
0–0.1 | 0.1–3.75 | 3.75–15 | >15 | ||||
131 | TTAGGC | 8713642719 | 95 | 16,032 | 29,642 | 9,636 | 6,546 |
132 | TGACCA | 9564232510 | 96 | 16,532 | 29,732 | 9,285 | 6,307 |
133 | ACAGTG | 8107787693 | 96 | 16,599 | 29,566 | 9,314 | 6,377 |
231 | GCCAAT | 9856735582 | 96 | 14,703 | 28,829 | 11,103 | 7,221 |
231 | CAGATC | 9135096761 | 96 | 14,664 | 28,591 | 11,303 | 7,298 |
233 | ACTTGA | 8796177410 | 96 | 14,738 | 27,346 | 11,713 | 8,059 |
331 | GATCAG | 9098543425 | 96 | 16,710 | 29,501 | 9,491 | 6,154 |
332 | TAGCTT | 10710694418 | 96 | 15,936 | 29,443 | 9,956 | 6,521 |
333 | GGCTAC | 9433383049 | 96 | 15,573 | 29,564 | 10,177 | 6,542 |
431 | CTTGTA | 8512385396 | 96 | 15,180 | 28,368 | 10,846 | 7,462 |
432 | AGTCAA | 8863916114 | 96 | 15,682 | 27,710 | 10,627 | 7,837 |
433 | AGTTCC | 9205308102 | 96 | 14,991 | 27,757 | 11,208 | 7,900 |
511 | TGACCA | 7080192660 | 94 | 15,480 | 26,114 | 12,024 | 8,238 |
512 | ACAGTG | 6668054022 | 96 | 15,392 | 26,004 | 11,811 | 8,649 |
513 | GCCAAT | 8814911815 | 96 | 15,470 | 28,361 | 10,500 | 7,525 |
521 | CAGATC | 8857730898 | 96 | 15,831 | 26,107 | 11,330 | 8,588 |
522 | ACTTGA | 8354907591 | 96 | 16,108 | 26,313 | 10,792 | 8,643 |
523 | GATCAG | 6919453352 | 96 | 17,249 | 28,572 | 8,458 | 7,577 |
531 | TAGCTT | 8282182945 | 96 | 15,611 | 28,124 | 10,408 | 7,713 |
532 | GGCTAC | 6896148722 | 95 | 15,771 | 28,693 | 9,966 | 7,426 |
533 | CTTGTA | 8631197062 | 95 | 14,860 | 28,393 | 10,683 | 7,920 |
B2-31 | AGTCAA | 8664717417 | 88 | 15,916 | 27,833 | 10,396 | 7,711 |
B2-32 | AGTTCC | 9101628243 | 90 | 16,114 | 27,576 | 10,248 | 7,918 |
B2-33 | ATGTCA | 7740678568 | 86 | 15,292 | 28,381 | 10,548 | 7,635 |
T31 | CCGTCC | 6488485876 | 95 | 16,674 | 27,689 | 10,025 | 7,468 |
T32 | GTCCGC | 8853003315 | 89 | 16,820 | 27,750 | 9,858 | 7,428 |
T33 | GTGAAA | 8213957582 | 90 | 16,707 | 27,532 | 10,081 | 7,536 |
Z31 | GTGGCC | 9127832844 | 89 | 16,843 | 27,659 | 9,898 | 7,456 |
Z32 | GTTTCG | 9417530235 | 87 | 16,940 | 28,042 | 9,500 | 7,374 |
Z33 | CGTACG | 9140750089 | 88 | 16,660 | 27,983 | 9,770 | 7,443 |
G31 | GAGTGG | 9615912781 | 89 | 16,337 | 27,959 | 10,022 | 7,538 |
G32 | ACTGAT | 9595710378 | 90 | 16,519 | 27,960 | 9,823 | 7,554 |
G33 | ATTCCT | 9773818624 | 90 | 16,086 | 28,398 | 9,997 | 7,375 |
