Table 3 16S rRNA metabarcoding, read counts and their ratios in various data processing stages for each sample.
From: Metagenomics and transcriptomics data from human colorectal cancer
sampleID | sequenced read pairs (count) | base quality ≥ 30 (in %) | cleaned fragments (count) | cleaned in sequenced (in %) |
|---|---|---|---|---|
CRC_01 | 333335 | 89.75 | 176823 | 53.05 |
CRC_02 | 238221 | 92.15 | 126462 | 53.09 |
CRC_03 | 356650 | 91.98 | 187474 | 52.57 |
CRC_04 | 307676 | 92.35 | 165991 | 53.95 |
CRC_05 | 261798 | 93.33 | 148547 | 56.74 |
CRC_06 | 122630 | 92.36 | 67416 | 54.98 |
CRC_07 | 175589 | 94.39 | 104310 | 59.41 |
CRC_08 | 210849 | 93.22 | 119255 | 56.56 |
CRC_09 | 238258 | 94.06 | 133700 | 56.12 |
CRC_10 | 233536 | 92.30 | 129813 | 55.59 |
CRC_11 | 291890 | 87.52 | 148406 | 50.84 |
CRC_12 | 173621 | 93.14 | 96744 | 55.72 |
CRC_13 | 204471 | 92.43 | 113588 | 55.55 |
CRC_14 | 255851 | 92.52 | 141822 | 55.43 |
CRC_15 | 254700 | 93.37 | 145899 | 57.28 |
CRC_16 | 210014 | 94.06 | 126141 | 60.06 |
CRC_17 | 197765 | 92.96 | 110784 | 56.02 |
CRC_18 | 161324 | 92.88 | 90441 | 56.06 |
CRC_19 | 147498 | 93.66 | 82425 | 55.88 |
CRC_20 | 235318 | 92.33 | 127779 | 54.30 |
CRC_21 | 169421 | 93.64 | 96627 | 57.03 |
CRC_22 | 249364 | 93.55 | 144146 | 57.81 |
CRC_23 | 171152 | 91.54 | 91281 | 53.33 |
CRC_24 | 102066 | 91.90 | 54880 | 53.77 |
CRC_25 | 334496 | 93.67 | 195656 | 58.49 |
CRC_26 | 265504 | 93.22 | 150713 | 56.76 |
CRC_27 | 69391 | 93.02 | 40037 | 57.70 |
CRC_28 | 137873 | 91.43 | 74333 | 53.91 |
CRC_29 | 176936 | 94.06 | 107348 | 60.67 |
CRC_30 | 202971 | 94.46 | 118078 | 58.17 |
CRC_31 | 220216 | 93.44 | 126807 | 57.58 |
CRC_32 | 108880 | 93.34 | 61688 | 56.66 |
CRC_33 | 219198 | 94.42 | 128793 | 58.76 |
CRC_34 | 305438 | 93.88 | 178759 | 58.53 |
