Table 1 Summary of genome sequencing data of tea plant using Illumina and PacBio SMRT sequencing platforms.

From: The tea plant reference genome and improved gene annotation using long-read and paired-end sequencing data

Library Type

Insert Size (bp)

Sequencing Platform

Read Length (bp)

Number Libraries/Cells

Raw Data

Clean Data

Total Data (Gb)

Sequence Coverage (×)

Total Data (Gb)

Sequence Coverage (×)

Illumina short reads

Paired-End

170

Hiseq 2500

150

2

209.12

68.79

192.18

63.22

250

Hiseq 2500

150

2

456.74

150.24

361.31

118.85

500

Hiseq 2500

90

3

356.08

117.13

305.03

100.34

800

Hiseq 2500

90

3

239.81

78.88

189.52

62.34

Mate-Pair

2000

Hiseq 2500

90

2

119.71

39.38

62.22

20.47

5000

Hiseq 2500

50

1

68.29

22.46

18.73

6.16

10000

Hiseq 2500

90

3

224.10

73.72

87.26

28.70

20000

Hiseq 2500

90

2

177.70

58.45

66.01

21.71

40000

Hiseq 2500

90

2

272.21

89.54

42.57

14.00

Total

   

20

2123.76

698.59

1324.83

435.79

PacBio SMRT long reads

RSII-10 kb

10000

RS II sequencer

6440

44

33.20

10.92

22.87

7.52

RSII-20 kb

20000

RS II sequencer

12632

97

92.20

30.33

63.53

20.90

Total

   

141

125.40

41.25

86.40

28.42

  1. The architecture of sequencing data was summarized from our previous reported tea plant genome6. The estimated genome size of 3.08 Gb was used to calculate the sequence coverage of each library6.
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