Table 6 TEs Content in the assembled asparagus bean genome.
From: The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis
Type | Repbase TEs | TE proteins | De novo | Combined TEs | ||||
|---|---|---|---|---|---|---|---|---|
Length (bp) | % in genome | Length (bp) | % in genome | Length (bp) | % in genome | Length (bp) | % in genome | |
DNA | 6,870,914 | 1.0825 | 9,850,112 | 1.5518 | 41,887,195 | 6.5992 | 46,098,143 | 7.2626 |
LINE | 698,393 | 0.11 | 1,195,466 | 0.1883 | 1,651,447 | 0.2601 | 2,666,968 | 0.4201 |
SINE | 30,804 | 0.0048 | — | — | 62,452 | 0.0098 | 74,704 | 0.0117 |
LTR | 33,989,514 | 5.3549 | 53,894,224 | 8.4908 | 112,113,184 | 17.6631 | 122,145,625 | 19.2437 |
Other | 13,118 | 0.002 | — | — | — | — | 13,118 | 0.002 |
Unknown | — | — | — | — | 119,021,287 | 18.7515 | 119,021,287 | 18.7515 |
Total | 41,222,404 | 6.494 | 64,741,265 | 10.1998 | 261,567,318 | 41.2092 | 272,160,906 | 42.8782 |
