Table 2 Summary of the V. riparia genome assembly and comparison with with V. vinifera varieties.
From: De novo phased assembly of the Vitis riparia grape genome
Vitis vinifera | Vitis riparia | |||
|---|---|---|---|---|
PN40024 | Cabernet sauvignon | Chardonnay | Riparia Gloire de Montpellier | |
Technology | Sanger | PacBio | PacBio | PacBio/10X Chromium |
Genome coverage | 12X | 140X | 115X | 225X |
Contig length (Mb) | NA | 591 p-tigs 368 h-tgs | 490 p-tigs 378 h-tgs | 530 p-tigs 317 h-tgs |
Number of contigs | 14,665 | 718 p-tigs 2,037 h-tgs | 854 p-tigs 1,883 h-tgs | 1,964 p-tigs 3,344 h-tgs |
Number of scaffolds | 2,065 | NA | NA | 174 |
N50 (kb) | 103 | 2,170 | 935 | 964 |
Total length (Mb) | 486 | 591 | 490 | 500 |
Number of coding genes | 42,414 (Cost.v3) | 36,687 | 29,675 | 37,207 |
BUSCO | C:95.8% F:1.5% M:2.7% | C:94.0% F:2.0% M:4.0% | C:95.0% F:1.6% M:3.4% | C:95.4% F:1.1% M:3.5% |
