Online-only Table 1 Repeated elements present in the Vitis riparia genome.
From: De novo phased assembly of the Vitis riparia grape genome
number of elements | length occupied (base pairs) | percentage of sequence | ||
|---|---|---|---|---|
Retroelements | 95,441 | 125,292,108 | 25.05% | |
SINEs | 0 | 0 | 0.00% | |
Penelope | 0 | 0 | 0.00% | |
LINEs: | 17,557 | 18,048,495 | 3.61% | |
CRE/SLACS | 0 | 0 | 0.00% | |
L2/CR1/Rex | 0 | 0 | 0.00% | |
R1/LOA/Jockey | 0 | 0 | 0.00% | |
R2/R4/NeSL | 0 | 0 | 0.00% | |
RTE/Bov-B | 0 | 0 | 0.00% | |
L1/CIN4 | 17,557 | 180,48,495 | 3.61% | |
LTR elements: | 77,884 | 107,243,613 | 21.44% | |
BEL/Pao | 0 | 0 | 0.00% | |
Ty1/Copia | 27,636 | 41,679,808 | 8.33% | |
Gypsy/DIRS1 | 48,176 | 63,337,662 | 12.66% | |
Retroviral | 0 | 0 | 0.00% | |
DNA transposons | 80,801 | 30,107,834 | 6.02% | |
hobo-Activator | 14,757 | 6,431,569 | 1.29% | |
Tc1-IS630-Pogo | 0 | 0 | 0.00% | |
En-Spm | 436 | 1,086,471 | 0.22% | |
MuDR-IS905 | 0 | 0 | 0.00% | |
PiggyBac | 0 | 0 | 0.00% | |
Tourist/Harbinger | 34,070 | 82,90 ,818 | 1.66% | |
Other (Mirage, P-element, Transib) | 0 | 0 | 0.00% | |
Rolling-circles | 0 | 0 | 0.00% | |
Unclassified | 53 | 67,393 | 0.01% | |
Total interspersed repeats | 155,467,335 | 31.09% | ||
Small RNA | 202 | 43,383 | 0.01% | |
Satellites | 1,282 | 1,975,618 | 0.40% | |
Simple repeats | 222,322 | 9,483,835 | 1.90% | |
Low complexity | 54,205 | 2,848,156 | 0.57% | |
