Table 3 General statistics of predicted protein-coding genes.
Gene set | Number | Average transcript length (bp) | Average CDS length (bp) | Average exons per gene | Average exon length (bp) | Average intron length (bp) | |
|---|---|---|---|---|---|---|---|
De novo | Augustus | 32,502 | 11,378.88 | 1,494.29 | 8.52 | 175.44 | 1,314.88 |
Genscan | 40,805 | 15.596.28 | 1,560.39 | 8.56 | 182.21 | 1,855.72 | |
Homolog | D. rerio | 52,244 | 9,049.21 | 1,076.27 | 5.56 | 193.69 | 1,749.76 |
D. labrax | 48,861 | 7,508.49 | 1,028.16 | 5.79 | 177.46 | 1,351.80 | |
G. aculeatu | 45,957 | 7,811.18 | 1,035.02 | 6.04 | 171.27 | 1,447.46 | |
O. latipes | 44,650 | 8,137.02 | 1,036.88 | 5.91 | 175.59 | 1,405.38 | |
T. rubripes | 43,159 | 8,366.10 | 1,046.02 | 6.21 | 168.48 | 1,401.06 | |
trans.orf/RNAseq | 18,058 | 11,694.21 | 1,095.81 | 7.62 | 317.99 | 1,401.06 | |
MAKER | 28,602 | 13,241.72 | 1,673.58 | 9.74 | 207.05 | 1,284.21 | |
