Table 6 sRNA annotation and prediction results.
From: Reference gene and small RNA data from multiple tissues of Davidia involucrata Baill
Sample Type | ZR | YR | YB | LB | LC | LX | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Count | Percentage | Count | Percentage | Count | Percentage | Count | Percentage | Count | Percentage | Count | Percentage | |
Mature miRNA | 549995 | 4.99% | 594518 | 5.38% | 4315731 | 39.41% | 714260 | 6.48% | 90223 | 0.81% | 962419 | 8.70% |
Precursor miRNA | 5004 | 0.05% | 2835 | 0.03% | 5444 | 0.05% | 5954 | 0.05% | 1404 | 0.01% | 5033 | 0.05% |
Rfam other sncRNA | 554 | 0.01% | 580 | 0.01% | 565 | 0.01% | 572 | 0.01% | 418 | 0 | 1321 | 0.01% |
rRNA | 5725 | 0.05% | 16442 | 0.15% | 6536 | 0.06% | 14169 | 0.13% | 8599 | 0.08% | 66842 | 0.60% |
snoRNA | 436 | 0 | 512 | 0 | 292 | 0 | 316 | 0 | 178 | 0 | 817 | 0.01% |
snRNA | 1395 | 0.01% | 869 | 0.01% | 927 | 0.01% | 1686 | 0.02% | 838 | 0.01% | 1459 | 0.01% |
tRNA | 7 | 0 | 51 | 0 | 10 | 0 | 20 | 0 | 1 | 0 | 16 | 0 |
Transcriptome | 4398410 | 39.91% | 4233656 | 38.31% | 4379692 | 39.15% | 4106787 | 37.05% | 4187990 | 37.78% | 4979574 | 45.64% |
Unmap sRNA | 5989783 | 54.35% | 6144853 | 55.89% | 6178346 | 56.05% | 6111352 | 55.47% | 6741014 | 60.82% | 4972517 | 44.97% |
Mapped onto unreliable transcripts | 68509 | 0.62% | 57680 | 0.52% | 71934 | 0.65% | 72354 | 0.65% | 62938 | 0.57% | 74092 | 0.67% |
Total | 11019818 | 100% | 11051996 | 100% | 11022568 | 100% | 11018338 | 100% | 11084396 | 100% | 11057255 | 100% |
