Table 7 Details of accuracy and completeness validation of genome assembly.
Illumina Reads Mapping | ||
Mapping ratio | 97.61% | |
Mapping coverage | 99.89% | |
Number of heterozygous SNPs | 3,735,880 | |
Number of homozygous SNPs | 3568 | |
CEGMA | ||
Total number of reference genes | 233 | |
Number of completely assembled CEGs | 231 | |
Proportion of completely assembled CEGs (%) | 99.14 | |
Number of assembled CEGs | 232 | |
Proportion of assembled CEGs (%) | 99.57 | |
BUSCO (genome mode) | Number | Proportion (%) |
All orthologues used | 4584 | 100.00 |
Complete and fragmented orthologues | 4419 | 97.1 |
Missing orthologues | 135 | 2.9 |
BUSCO (protein mode) | Number | Proportion (%) |
All orthologues used | 4584 | 100.00 |
Complete and fragmented orthologues | 4182 | 91.2% |
Missing orthologues | 402 | 8.8 |
