Fig. 1

Flowchart of experimental design of this study. A high-resolution temporal waterlogging/drainage treatment was used to capture the gene expression changes in roots of two S. indicum genotypes (EG and R2G). The untreated plants were used as controls. Three biological replicates per condition were sampled for transcriptome sequencing. All raw reads were quality controlled prior to aligning to S. indicum reference genome (v1.0). The uniquely aligned reads were employed for expression profile analyses.