Table 1 Summary of sequencing data generated in this study.
From: A chromosome-level genome assembly of the Chinese tupelo Nyssa sinensis
Library type | Platform | Read length | Clean reads | Clean base | Coverage | Application |
---|---|---|---|---|---|---|
Long reads | PacBio Sequel | 14,526 bp (N50) | 11,197,047 | 104.19 Gb | 99.12× | Genome assembly |
Short reads | HiSeq. 4000 | 2 × 150 bp | 2 × 196,110,604 | 58.83 Gb | 55.97× | Genome survey and base level correction |
Hi-C | HiSeq. 4000 | 2 × 150 bp | 2 × 423,362,084 | 126.81 Gb | 120.63× | Chromosome construction |
RNA-Seq | HiSeq. 4000 | 2 × 150 bp | 2 × 57,866,710 | 17.36 Gb | — | Genome annotation |