Table 4 Performances reported for PubTator.

From: PGxCorpus, a manually annotated corpus for pharmacogenomics

Entity type

Tool

Evaluated on

Performance

P

R

F1

Chemicals

Dictionary-based49

n/a

n/a

n/a

53.82

Disease

DNorm50

NCBI Disease

82.8

81.9

80.9

Corpus

Gene

GeneTUKit51

n/a

n/a

n/a

82.97

GNAT-100

43.0

56.7

48.9

Mutation

tmVar52

MutationFinder

98.80

89.62

93.98

Corpus

  1. PubTator is the NER tool used during the pre-annotation step of PGxCorpus. P, R and F1 stand for Precision, Recall and F1-score, respectively. n/a denotes we were not able to find information to fill the cell.
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