Table 2 Characteristics of reconstructed MAGs with MGCs obtained from the IMG metagenomic data.
From: Unravelling the diversity of magnetotactic bacteria through analysis of open genomic databases
Organism | Phylum/Class | Metagenome accession in NCBI/IMG | Size (bp) | Scaffolds (no.) | GC (%) | N50 (bp) | CheckM completeness (%) | CheckM contamination (%) |
---|---|---|---|---|---|---|---|---|
Ca. Hydrogenedentes bacterium MAG_17963_hgd_11185 | Ca. Hydrogenedentes | 3300017963 | 3018788 | 288 | 60.18 | 11662 | 71.11 | 1.46 |
Ca. Hydrogenedentes bacterium MAG_17971_hgd_13044 | Ca. Hydrogenedentes | 3300017971 | 2683901 | 240 | 60.43 | 12541 | 60.01 | 1.16 |
Deltaproteobacteria | 3300000134 | 1498667 | 692 | 49.54 | 2676 | 60.69 | 3.87 | |
Deltaproteobacteria | 3300000241 | 1547003 | 324 | 49.45 | 6761 | 55.59 | 2.41 | |
Deltaproteobacteria | 3300000792 | 3032840 | 409 | 49.74 | 11269 | 89.28 | 5.86 | |
Deltaproteobacteria bacterium MAG_09788_naph_3789 | Deltaproteobacteria | 3300009788 | 899797 | 137 | 47.24 | 7579 | 49.08 | 0.97 |
Deltaproteobacteria | 3300015370 | 3868622 | 334 | 48.42 | 14397 | 89.68 | 5.59 | |
Deltaproteobacteria bacterium MAG_17929_sntb_2691 | Deltaproteobacteria | 3300017929 | 2777907 | 276 | 53.10 | 17193 | 62.13 | 5.10 |
Deltaproteobacteria bacterium MAG_17996_sntb_2092 | Deltaproteobacteria | 3300017996 | 1691080 | 454 | 53.11 | 4033 | 50.53 | 2.33 |
Deltaproteobacteria bacterium MAG_22204_dsfv_00193 | Deltaproteobacteria | 3300022204 | 2675335 | 75 | 52.74 | 60141 | 89.52 | 0.36 |
Deltaproteobacteria bacterium MAG_22309_dsfv_02248 | Deltaproteobacteria | 3300022309 | 2902378 | 66 | 55.15 | 78905 | 91.60 | 1.79 |
Gammaproteobacteria bacterium MAG_00150_gam_01094 | Gammaproteobacteria | 3300000150 | 2847655 | 486 | 49.07 | 8986 | 98.17 | 3.96 |
Gammaproteobacteria bacterium MAG_00160_gam_00995 | Gammaproteobacteria | 3300000160 | 2903803 | 318 | 49.10 | 15339 | 99.39 | 4.88 |
Gammaproteobacteria bacterium MAG_00172_gam_01896 | Gammaproteobacteria | 3300000172 | 2866084 | 274 | 48.97 | 18904 | 96.95 | 3.05 |
Gammaproteobacteria bacterium MAG_00188_gam_00697 | Gammaproteobacteria | 3300000188 | 2672010 | 567 | 48.83 | 6818 | 95.12 | 4.19 |
Gammaproteobacteria bacterium MAG_00212_gam_198 | Gammaproteobacteria | 3300000212 | 2103212 | 955 | 48.40 | 2901 | 78.43 | 5.08 |
Gammaproteobacteria bacterium MAG_00215_gam_02099 | Gammaproteobacteria | 3300000215 | 2931288 | 507 | 49.02 | 8845 | 95.73 | 5.34 |
Magnetococcales bacterium MAG_21055_mgc_1100 | Ca. Etaproteobacteria | 3300021055 | 3585593 | 930 | 52.41 | 5203 | 84.82 | 3.65 |
Nitrospinae bacterium MAG_09705_ntspn_70101 | Nitrospinae | 3300009705 | 2024644 | 120 | 42.63 | 30902 | 67.25 | 2.56 |
Nitrospirae bacterium MAG_10313_ntr_31102 | Nitrospirae | 3300010313 | 1933163 | 344 | 35.33 | 7568 | 90.20 | 3.64 |
Pelobacteraceae bacterium MAG_21601_9_030103 | Deltaproteobacteria | 3300021601 | 2536371 | 232 | 54.11 | 20074 | 78.15 | 8.39 |
Pelobacteraceae bacterium MAG_13126_9_058104 | Deltaproteobacteria | 3300013126 | 3576562 | 72 | 52.01 | 83631 | 91.61 | 1.29 |
Pelobacteraceae bacterium MAG_21600_9_004105 | Deltaproteobacteria | 3300021600 | 3430740 | 60 | 51.50 | 87025 | 90.32 | 0.65 |
Planctomycetes bacterium MAG_11118_pl_115106 | Planctomycetes | 3300011118 | 3767441 | 157 | 48.98 | 33372 | 89.44 | 1.24 |
Planctomycetes bacterium MAG_17991_pl_60107 | Planctomycetes | 3300017991 | 1289005 | 144 | 49.53 | 10179 | 64.20 | 0.00 |
Planctomycetes bacterium MAG_18080_pl_157108 | Planctomycetes | 3300018080 | 3144921 | 139 | 48.44 | 34208 | 90.91 | 3.41 |
Rhodospirillaceae bacterium MAG_01419_mvb_30 | Alphaproteobacteria | 3300001419 | 2811682 | 477 | 55.72 | 7268 | 94.58 | 4.10 |
Rhodospirillaceae bacterium MAG_04806_tlms_2109 | Alphaproteobacteria | 3300004806 | 2085124 | 309 | 57.51 | 8435 | 87.64 | 2.12 |
Rhodospirillaceae bacterium MAG_05422_2-02_14110 | Alphaproteobacteria | 3300005422 | 2281835 | 255 | 61.09 | 11800 | 85.45 | 0.50 |
Rhodospirillaceae bacterium MAG_05596_2-02_51111 | Alphaproteobacteria | 3300005596 | 1831947 | 329 | 61.19 | 6777 | 76.91 | 0.25 |
Rhodospirillaceae bacterium MAG_06104_tlms_034112 | Alphaproteobacteria | 3300006104 | 3186839 | 353 | 64.25 | 13005 | 89.59 | 2.53 |
Rhodospirillaceae bacterium MAG_22225_2-02_112113 | Alphaproteobacteria | 3300022225 | 2547095 | 147 | 61.01 | 26510 | 91.17 | 5.22 |
Ca. Omnitrophica bacterium SCGC AG-290-C17 (SAG)116 | Ca. Omnitrophica | 3300015153 | 1712617 | 171 | 48.60 | 13921 | 62.84 | 0.00 |
Uncultured microorganism SbSrfc.SA12.01.D19 (SAG)117 | Deltaproteobacteria | 3300022116 | 2501480 | 175 | 52.60 | 25257 | 49.13 | 0.00 |