Table 1 DNA sequencing metrics of C. fangiana, before and after quality control.
From: A chromosome-level reference genome of the hornbeam, Carpinus fangiana
Sequencing technique | Library type | Insert size (bp) | Read length (bp) | Amount of sequence | Depth (x-times) | ||
|---|---|---|---|---|---|---|---|
Raw data (Gb) | clean data (Gb) | Raw data | clean data | ||||
Next-generation | paired-end | 230 | 150 | 11.32 | 10.92 | 28.54 | 27.52 |
paired-end | 500 | 150 | 10.28 | 10.21 | 25.91 | 25.73 | |
paired-end | 800 | 150 | 15.82 | 15.64 | 39.88 | 39.42 | |
mate pair | 2,000 | 150 | 16.49 | 6.55 | 41.56 | 16.51 | |
mate pair | 5,000 | 150 | 13.25 | 9.71 | 33.39 | 24.47 | |
mate pair | 10,000 | 150 | 17.97 | 10.71 | 45.30 | 27.00 | |
mate pair | 20,000 | 150 | 29.99 | 14.12 | 75.59 | 35.59 | |
Total | 115.12 | 77.85 | 290.17 | 196.23 | |||
Hi-C | Hi-C | 300-700 | 150 | 52.54 | 52.19 | 132.43 | 131.55 |
