Table 2 Genome assembly statistics of the ADG1, ADG2, TBR, JUZ and CUR genomes. (Values in parentheses are before removing redundant contigs).
Quality metric | ADG1 | ADG2 | TBR | JUZ | CHA | CUR |
|---|---|---|---|---|---|---|
# of contigs | 35,961 | 310,723 | 1,272,956 | 249,222 | 259,834 | 578,826 |
(87,194) | (826,888) | (4,334,576) | (692,839) | (608,922) | (1,348,978) | |
Contigs > 1000 bp | 35,744 | 248,064 | 271,542 | 194,864 | 194,390 | 364,379 |
— | (456,177) | (271,558) | (436,731) | (344,939) | (657,215) | |
Length of assembly (Mb) | 841.4 | 991.1 | 1,032 | 1,002 | 790.3 | 1,208 |
(842.0) | (1,611) | (1,598) | (1,800) | (1,251) | (2,067) | |
GC % | 34.83 | 34.84 | 35.69 | 35.41 | 35.32 | 36.27 |
— | (35.2) | (36.05) | (35.63) | (35.88) | (36.7) | |
Largest contig length (Kb) | 3,384 | 102 | 73 | 112 | 105 | 118 |
Contig N50 | 122,016 | 4,721 | 1,193 | 7,359 | 4,795 | 3,176 |
(62,124) | (3,154) | (267) | (4,598) | (3,335) | (2,221) | |
Contig L50 | 1,312 | 59,398 | 207,326 | 84,278 | 42,633 | 109,841 |
% BUSCO present genes | 85.8 | 53 | 18.8 | 58.6 | 54.1 | 45.8 |
% BUSCO partial genes | 8.5 | 28.4 | 35.6 | 27.2 | 24.7 | 34.6 |
% BUSCO duplicated genes | 9.5 | 5.7 | 3.5 | 6.9 | 4.1 | 6 |
