Fig. 2
From: Generation of a murine SWATH-MS spectral library to quantify more than 11,000 proteins
Characteristics of the murine spectral library. (a) True positive (black) and all protein identifications (red) as a function of protein FDR. The vertical dashed line was protein FDR of 0.01 determined by MAYU software. (b) True positive (black) and all peptide identifications (red) as a function of protein FDR. The vertical dashed line was protein FDR of 0.01 determined by MAYU software. (c) Overlap of murine proteins in UniProtKB/Swiss-Prot, a subset annotated with protein-level evidence and the murine spectral library. (d) Coverage of the proteome for SWATH-MS spectral libraries of different species. The numbers of proteome coverage were directly taken from the cited publication13,15,17,38. (e) The number of proteotypic peptides per protein in the murine spectral library.
