Table 1 Libraries and read statistics used for the O. granulata genome assembly.
From: The draft genome sequence of an upland wild rice species, Oryza granulata
Libraries | Illumina sequencer | Insert size (bp) | Read length (bp) | Raw data (Mb) | Raw sequence coverage (×) |
|---|---|---|---|---|---|
Paired-End | HiSeq. 2500 | 260 | 150 | 18,198.87 | 22.98 |
HiSeq. 2500 | 260 | 150 | 19,450.86 | 24.56 | |
HiSeq. 2500 | 260 | 150 | 18,386.95 | 23.22 | |
Mate Pairs | HiSeq. 2000 | 2,940 | 100 | 18,499.36 | 23.36 |
HiSeq. 2000 | 2,920 | 100 | 16,957.87 | 21.41 | |
HiSeq. 2000 | 2,980 | 100 | 15,201.03 | 19.19 | |
HiSeq. 2500 | 8,960 | 125 | 15,150.44 | 19.13 | |
HiSeq. 2000 | 19,800 | 101 | 11,536.84 | 14.57 | |
Hi-C | HiSeq. X Ten | 200–500 | 150 | 109,413.57 | 138.15 |
