Table 8 Summary of the annotated repeat sequences in the O. granulata genome.
From: The draft genome sequence of an upland wild rice species, Oryza granulata
Transposable elements | Length (bp) | Percentage (%) |
|---|---|---|
DNA transposons | 72,407,795 | 9.83 |
   En-Spm | 10,454,636 | 1.42 |
   Harbinger | 10,685,997 | 1.45 |
   Maverick | 900,730 | 0.12 |
   MuDR | 31,123,966 | 4.23 |
   TcMar-Stowaway | 7,334,046 | 1.00 |
   Tourist | 62,565 | 0.01 |
   hAT | 8,611,368 | 1.17 |
   Helitron | 893,911 | 0.12 |
   Others | 2,340,576 | 0.32 |
RNA transposons | 376,029,522 | 51.05 |
   Non-LTR retrotransposons | 1,584,873 | 0.22 |
      LINE | 1,459,061 | 0.20 |
      SINE | 125,812 | 0.02 |
   LTR retrotransposons | 374,444,649 | 50.83 |
      Copia | 41,126,935 | 5.58 |
      Gypsy | 278,699,663 | 37.83 |
      Others | 54,618,051 | 7.41 |
Other repeats | 8,130,028 | 1.10 |
   Low complexity | 764,382 | 0.10 |
   Simple repeats | 3,685,309 | 0.50 |
   Unknown | 3,680,337 | 0.50 |
Total | 456,567,345 | 61.98 |
