Table 1 Datasets used for the construction and validation of NJC19.

Mouse fecal and cecal microbiome data (Online-only Table 1a).

Application of taxonomic analysis tools to the microbiome data (Methods).

Output flies of the taxonomic analysis tools, which include the lists of identified microbial taxa and their relative abundances³⁵.

Lists of identified microbial taxa and their relative abundances from mouse fecal and cecal microbiome data³⁵.

Selection of microbial species in metagenome samples based on the frequency of the species occurrence across the samples (Methods).

List of selected microbial species in the metagenome samples³⁵.

Literature (Online-only Table 1b) and NJS16³⁴.

Manual collection of metabolic information from literature, and revision of NJS16 (Methods).

Interaction network of microbial species/host cells mediated by metabolic compounds, NJC19 (Online-only Tables 3-5, Supplementary Table 1 and the corresponding JSON files³⁵).

Mouse microbiome and metabolome data^4,37,38.

Extraction of taxonomic compositions and metabolite levels (see Technical Validation and Fig. 3 legend).

Taxonomic compositions³⁵, and microbial producer and metabolite levels for NJC19 validation (Fig. 3)