Online-only Table 3 List of microbial species and host cell types in NJC19.

*

31971

Absiella dolichum

Eubacterium dolichum

1511

Acetoanaerobium sticklandii

Clostridium sticklandii

438

Acetobacter pasteurianus

*

33952

Acetobacterium woodii

28187

Acetohalobium arabaticum

2148

Acholeplasma laidlawii

72556

Achromobacter piechaudii

85698

Achromobacter xylosoxidans

905

Acidaminococcus fermentans

53635

Acidimicrobium ferrooxidans

524

Acidiphilium cryptum

33059

Acidithiobacillus caldus

920

Acidithiobacillus ferrooxidans

28049

Acidothermus cellulolyticus

80867

Acidovorax avenae

47920

Acidovorax delafieldii

471

Acinetobacter calcoaceticus

40216

Acinetobacter radioresistens

67854

Actinobacillus succinogenes

103618

Actinomyces coleocanis

544580

Actinomyces oris

103621

Actinomyces urogenitalis

1656

Actinomyces viscosus

40567

Actinosynnema mirum

*

1377

Aerococcus viridans

219314

Aeromicrobium marinum

644

Aeromonas hydrophila

645

Aeromonas salmonicida

56636

Aeropyrum pernix

714

Aggregatibacter actinomycetemcomitans

358

Agrobacterium tumefaciens

239935

Akkermansia muciniphila

179636

Alicycliphilus denitrificans

*

214856

Alistipes finegoldii

*

626932

Alistipes indistinctus

*

1118061

Alistipes obesi

Bacteroidales bacterium ph8

*

328813

Alistipes onderdonkii

28117

Alistipes putredinis

*

1288121

Alistipes senegalensis

328814

Alistipes shahii

*

908612

Alistipes sp. HGB5

*

671218

Alloprevotella rava

Prevotella sp. oral taxon 302

76122

Alloprevotella tannerae

81468

Aminobacterium colombiense

*

81412

Aminomonas paucivorans

39488

Anaerobutyricum hallii

Eubacterium hallii

33029

Anaerococcus hydrogenalis

33032

Anaerococcus lactolyticus

*

1287640

Anaerococcus obesiensis

33034

Anaerococcus prevotii

33036

Anaerococcus tetradius

33037

Anaerococcus vaginalis

105841

Anaerostipes caccae

*

649756

Anaerostipes hadrus

Eubacterium hadrum

169435

Anaerotruncus colihominis

2234

Archaeoglobus fulgidus

1382

Atopobium parvulum

1383

Atopobium rimae

82135

Atopobium vaginae

354

Azotobacter vinelandii

1390

Bacillus amyloliquefaciens

1392

Bacillus anthracis

1452

Bacillus atrophaeus

1413

Bacillus cellulosilyticus

1396

Bacillus cereus

79880

Bacillus clausii

1398

Bacillus coagulans

408580

Bacillus coahuilensis

86665

Bacillus halodurans

1402

Bacillus licheniformis

1404

Bacillus megaterium

1405

Bacillus mycoides

Bacillus weihenstephanensis

79885

Bacillus pseudofirmus

64104

Bacillus pseudomycoides

1408

Bacillus pumilus

85683

Bacillus selenitireducens

1423

Bacillus subtilis

1428

Bacillus thuringiensis

*

376804

Bacteroides barnesiae

47678

Bacteroides caccae

246787

Bacteroides cellulosilyticus

*

626929

Bacteroides clarus

310298

Bacteroides coprocola

387090

Bacteroides coprophilus

*

151276

Bacteroides coprosuis

357276

Bacteroides dorei

28111

Bacteroides eggerthii

*

674529

Bacteroides faecis

338188

Bacteroides finegoldii

*

626930

Bacteroides fluxus

817

Bacteroides fragilis

*

376806

Bacteroides gallinarum

290053

Bacteroides helcogenes

329854

Bacteroides intestinalis

*

204516

Bacteroides massiliensis

*

291645

Bacteroides nordii

*

626931

Bacteroides oleiciplenus

28116

Bacteroides ovatus

384638

Bacteroides pectinophilus

310297

Bacteroides plebeius

*

392838

Bacteroides propionicifaciens

*

310300

Bacteroides pyogenes

376805

Bacteroides salanitronis

*

291644

Bacteroides salyersiae

*

469589

Bacteroides sp. 2_1_33B

46506

Bacteroides stercoris

818

Bacteroides thetaiotaomicron

820

Bacteroides uniformis

821

Bacteroides vulgatus

371601

Bacteroides xylanisolvens

*

1015

Bergeyella zoohelcum

*

999

Bernardetia litoralis

Flexibacter litoralis

1680

Bifidobacterium adolescentis

1683

Bifidobacterium angulatum

28025

Bifidobacterium animalis

1681

Bifidobacterium bifidum

1685

Bifidobacterium breve

1686

Bifidobacterium catenulatum

1689

Bifidobacterium dentium

78342

Bifidobacterium gallicum

216816

Bifidobacterium longum

28026

Bifidobacterium pseudocatenulatum

*

1694

Bifidobacterium pseudolongum

35833

Bilophila wadsworthia

1322

Blautia hansenii

53443

Blautia hydrogenotrophica

40520

Blautia obeum

Ruminococcus obeum

*

33035

Blautia producta

Ruminococcus productus

*

1287055

Brachyspira hampsonii

*

159

Brachyspira hyodysenteriae

*

13264

Brachyspira innocens

*

84377

Brachyspira intermedia

*

84378

Brachyspira murdochii

*

52584

Brachyspira pilosicoli

375

Bradyrhizobium japonicum

1393

Brevibacillus brevis

235

Brucella abortus

29459

Brucella melitensis

29461

Brucella suis

9

Buchnera aphidicola

152480

Burkholderia ambifaria

95486

Burkholderia cenocepacia

292

Burkholderia cepacia

337

Burkholderia glumae

87883

Burkholderia multivorans

60552

Burkholderia vietnamiensis

*

544644

Butyricimonas synergistica

45851

Butyrivibrio crossotus

831

Butyrivibrio fibrisolvens

43305

Butyrivibrio proteoclasticus

*

911092

Caldanaerobacter subterraneus

31899

Caldicellulosiruptor bescii

44001

Caldicellulosiruptor saccharolyticus

*

693075

Caldisericum exile

*

200415

Caldisphaera lagunensis

477976

Calditerrivibrio nitroreducens

*

187145

Caldithrix abyssi

*

515264

Caloramator australicus

291048

Caminibacter mediatlanticus

*

195

Campylobacter coli

*

199

Campylobacter concisus

*

200

Campylobacter curvus

*

196

Campylobacter fetus

824

Campylobacter gracilis

*

76517

Campylobacter hominis

197

Campylobacter jejuni

*

201

Campylobacter lari

*

203

Campylobacter rectus

*

204

Campylobacter showae

*

28080

Campylobacter upsaliensis

*

827

Campylobacter ureolyticus

*

5476

Candida albicans

*

42374

Candida dubliniensis

*

5482

Candida tropicalis

186490

Candidatus Baumannia cicadellinicola

*

28188

Capnocytophaga canimorsus

*

28189

Capnocytophaga cynodegmi

*

1017

Capnocytophaga gingivalis

*

45242

Capnocytophaga granulosa

*

1018

Capnocytophaga ochracea

*

1019

Capnocytophaga sputigena

*

300419

Catellicoccus marimammalium

100886

Catenibacterium mitsuokai

1711

Cellulomonas flavigena

29360

Cellulosilyticum lentocellum

Clostridium lentocellum

*

188913

Cetobacterium somerae

1096

Chlorobium phaeobacteroides

1108

Chloroflexus aurantiacus

536

Chromobacterium violaceum

545

Citrobacter koseri

67825

Citrobacter rodentium

133448

Citrobacter youngae

1496

Clostridioides difficile

Clostridium difficile, Peptoclostridium difficile

1488

Clostridium acetobutylicum

*

1137848

Clostridium arbusti

333367

Clostridium asparagiforme

*

84023

Clostridium autoethanogenum

1520

Clostridium beijerinckii

208479

Clostridium bolteae

1491

Clostridium botulinum

1492

Clostridium butyricum

217159

Clostridium carboxidivorans

*

36834

Clostridium celatum

1493

Clostridium cellulovorans

*

358743

Clostridium citroniae

*

1531

Clostridium clostridioforme

*

179628

Clostridium colicanis

89152

Clostridium hiranonis

89153

Clostridium hylemonae

*

1522

Clostridium innocuum

1534

Clostridium kluyveri

1535

Clostridium leptum

1538

Clostridium ljungdahlii

84026

Clostridium methylpentosum

1542

Clostridium novyi

Clostridium oedematiens

*

1501

Clostridium pasteurianum

1502

Clostridium perfringens

*

169679

Clostridium saccharobutylicum

84030

Clostridium saccharolyticum

*

36745

Clostridium saccharoperbutylacetonicum

*

84031

Clostridium sartagoforme

Clostridium sartagoformum

29347

Clostridium scindens

*

97138

Clostridium sp. ASF356

*

97139

Clostridium sp. ASF502

1509

Clostridium sporogenes

1512

Clostridium symbiosum

1513

Clostridium tetani

*

219748

Clostridium tunisiense

*

1519

Clostridium tyrobutyricum

*

45497

Clostridium ultunense

74426

Collinsella aerofaciens

147207

Collinsella intestinalis

147206

Collinsella stercoris

285

Comamonas testosteroni

116085

Coprococcus catus

410072

Coprococcus comes

33043

Coprococcus eutactus

*

1697

Corynebacterium ammoniagenes

1717

Corynebacterium diphtheriae

1718

Corynebacterium glutamicum

1747

Cutibacterium acnes

Propionibacterium acnes

985

Cytophaga hutchinsonii

1299

Deinococcus radiodurans

118000

Denitrovibrio acetiphilus

453230

Desulfarculus baarsii

259354

Desulfatibacillum alkenivorans

*

49338

Desulfitobacterium hafniense

2296

Desulfobacterium autotrophicum

*

28223

Desulfobacula toluolica

894

Desulfobulbus propionicus

*

873

Desulfocurvibacter africanus

Desulfovibrio africanus

58138

Desulfofarcimen acetoxidans

*

293256

Desulfohalovibrio alkalitolerans

Desulfovibrio alkalitolerans

1565

Desulfotomaculum nigrificans

Desulfotomaculum carboxydivorans

59610

Desulfotomaculum reducens

*

58180

Desulfovibrio alaskensis

876

Desulfovibrio desulfuricans

878

Desulfovibrio fructosivorans

*

879

Desulfovibrio gigas

*

191026

Desulfovibrio hydrothermalis

*

889

Desulfovibrio longus

184917

Desulfovibrio magneticus

*

63560

Desulfovibrio oxyclinae

901

Desulfovibrio piger

880

Desulfovibrio salexigens

*

42252

Desulfovibrio termitidis

881

Desulfovibrio vulgaris

*

427923

Desulfurivibrio alkaliphilus

*

64160

Desulfurobacterium thermolithotrophum

891

Desulfuromonas acetoxidans

*

427926

Dethiobacter alkaliphilus

218538

Dialister invisus

39486

Dorea formicigenerans

Eubacterium formicigenerans

88431

Dorea longicatena

*

156974

Dysgonomonas gadei

*

163665

Dysgonomonas mossii

84112

Eggerthella lenta

*

5802

Eimeria tenella

*

1117645

Elizabethkingia anophelis

*

238

Elizabethkingia meningoseptica

*

247

Empedobacter brevis

*

312279

Emticicia oligotrophica

69218

Enterobacter cancerogenus

Enterobacter taylorae

550

Enterobacter cloacae

*

57732

Enterococcus asini

*

33945

Enterococcus avium

*

317735

Enterococcus caccae

37734

Enterococcus casseliflavus

*

44008

Enterococcus cecorum

*

1355

Enterococcus columbae

*

44009

Enterococcus dispar

*

53345

Enterococcus durans

1351

Enterococcus faecalis

1352

Enterococcus faecium

1353

Enterococcus gallinarum

*

160453

Enterococcus gilvus

*

155618

Enterococcus haemoperoxidus

*

1354

Enterococcus hirae

246144

Enterococcus italicus

*

71451

Enterococcus malodoratus

*

155617

Enterococcus moraviensis

*

53346

Enterococcus mundtii

*

160454

Enterococcus pallens

*

154621

Enterococcus phoeniculicola

*

71452

Enterococcus raffinosus

*

41997

Enterococcus saccharolyticus

*

1356

Enterococcus sulfureus

*

112904

Enterococcus villorum

Enterococcus porcinus

*

1547

Erysipelatoclostridium ramosum

Clostridium ramosum

1648

Erysipelothrix rhusiopathiae

208962

Escherichia albertii

Escherichia/Shigella albertii

562

Escherichia coli

564

Escherichia fergusonii

Escherichia/Shigella fergusonii

253239

Ethanoligenens harbinense

*

35517

Eubacterium brachy

29322

Eubacterium cellulosolvens

39485

Eubacterium eligens

1736

Eubacterium limosum

*

97253

Eubacterium plexicaudatum

*

39490

Eubacterium ramulus

39491

Eubacterium rectale

51123

Eubacterium saphenum

39492

Eubacterium siraeum

39496

Eubacterium ventriosum

*

39498

Eubacterium yurii

853

Faecalibacterium prausnitzii

833

Fibrobacter succinogenes

*

143361

Filifactor alocis

1260

Finegoldia magna

Peptostreptococcus magnus

*

271155

Flavobacterium antarcticum

*

55197

Flavobacterium branchiophilum

*

510946

Flavobacterium cauense

*

996

Flavobacterium columnare

*

1341165

Flavobacterium enshiense

*

229204

Flavobacterium frigoris

986

Flavobacterium johnsoniae

*

1401027

Flavobacterium limnosediminis

*

96345

Flavobacterium psychrophilum

*

498301

Flavobacterium rivuli

*

329186

Flavobacterium saliperosum

*

70993

Flexithrix dorotheae

849

Fusobacterium gonidiaformans

Fusobacterium gonidiiformans

850

Fusobacterium mortiferum

Clostridium rectum

*

859

Fusobacterium necrophorum

851

Fusobacterium nucleatum

860

Fusobacterium periodonticum

*

854

Fusobacterium russii

861

Fusobacterium ulcerans

856

Fusobacterium varium

*

84136

Gemella bergeri

*

29391

Gemella morbillorum

*

84135

Gemella sanguinis

33940

Geobacillus thermodenitrificans

Bacillus thermodenitrificans

225194

Geobacter bemidjiensis

313985

Geobacter lovleyi

28232

Geobacter metallireducens

35554

Geobacter sulfurreducens

351604

Geobacter uraniireducens

442

Gluconobacter oxydans

Gluconobacter uchimurae

364410

Granulibacter bethesdensis

727

Haemophilus influenzae

729

Haemophilus parainfluenzae

*

656519

Halanaerobium hydrogeniformans

*

2331

Halanaerobium praevalens

*

43595

Halanaerobium saccharolyticum

2238

Haloarcula marismortui

2242

Halobacterium salinarum

*

42422

Halobacteroides halobius

2246

Haloferax volcanii

*

40091

Helcococcus kunzii

*

212

Helicobacter acinonychis

*

37372

Helicobacter bilis

*

56877

Helicobacter bizzozeronii

*

123841

Helicobacter canadensis

*

29419

Helicobacter canis

*

138563

Helicobacter cetorum

*

213

Helicobacter cinaedi

*

214

Helicobacter felis

*

215

Helicobacter fennelliae

*

32025

Helicobacter hepaticus

*

398626

Helicobacter macacae

*

217

Helicobacter mustelae

*

35818

Helicobacter pullorum

210

Helicobacter pylori

*

104628

Helicobacter suis

*

157268

Helicobacter winghamensis

*

1279027

Hippea alviniae

*

84405

Hippea maritima

*

1735

Holdemanella biformis

Eubacterium biforme

61171

Holdemania filiformis

35830

Hungateiclostridium cellulolyticum

Acetivibrio cellulolyticus

*

288965

Hungateiclostridium clariflavum

Clostridium clariflavum

1515

Hungateiclostridium thermocellum

Clostridium thermocellum, Ruminiclostridium thermocellum

154046

Hungatella hathewayi

Clostridium hathewayi

53399

Hyphomicrobium denitrificans

*

591197

Ignavibacterium album

160233

Ignicoccus hospitalis

167642

Ilyobacter polytropus

261299

Intestinibacter bartlettii

*

43995

Johnsonella ignava

92945

Ketogulonicigenium vulgare

502

Kingella denitrificans

573

Klebsiella pneumoniae

244366

Klebsiella variicola

467210

Lachnoanaerobaculum saburreum

Eubacterium saburreum

*

140626

Lachnobacterium bovis

66219

Lachnoclostridium phytofermentans

Clostridium phytofermentans

*

89059

Lactobacillus acidipiscis

1579

Lactobacillus acidophilus

83683

Lactobacillus amylolyticus

1604

Lactobacillus amylovorus

Lactobacillus sobrius

*

1605

Lactobacillus animalis

227943

Lactobacillus antri

1580

Lactobacillus brevis

1581

Lactobacillus buchneri

1582

Lactobacillus casei

181675

Lactobacillus coleohominis

*

1610

Lactobacillus coryniformis

47770

Lactobacillus crispatus

*

28038

Lactobacillus curvatus

1584

Lactobacillus delbrueckii

*

137357

Lactobacillus equi

*

420645

Lactobacillus equicursoris

*

1612

Lactobacillus farciminis

1613

Lactobacillus fermentum

*

640331

Lactobacillus florum

*

1614

Lactobacillus fructivorans

1596

Lactobacillus gasseri

*

227942

Lactobacillus gastricus

*

1203069

Lactobacillus gigeriorum

1587

Lactobacillus helveticus

1588

Lactobacillus hilgardii

*

1203033

Lactobacillus hominis

147802

Lactobacillus iners

Lactobacillus sp. 7_1_47FAA

*

148604

Lactobacillus ingluviei

Lactobacillus thermotolerans

109790

Lactobacillus jensenii

33959

Lactobacillus johnsonii

*

267818

Lactobacillus kefiranofaciens

*

176292

Lactobacillus malefermentans

*

1618

Lactobacillus mali

*

97478

Lactobacillus mucosae

*

1622

Lactobacillus murinus

1632

Lactobacillus oris

1597

Lactobacillus paracasei

*

872327

Lactobacillus pasteurii

*

1589

Lactobacillus pentosus

1590

Lactobacillus plantarum

Lactobacillus arizonensis

*

449659

Lactobacillus pobuzihii

1598

Lactobacillus reuteri

47715

Lactobacillus rhamnosus

*

231049

Lactobacillus rossiae

1623

Lactobacillus ruminis

*

228229

Lactobacillus saerimneri

1599

Lactobacillus sakei

1624

Lactobacillus salivarius

*

1625

Lactobacillus sanfranciscensis

*

1231337

Lactobacillus shenzhenensis

*

97137

Lactobacillus sp. ASF360

*

152335

Lactobacillus suebicus

227945

Lactobacillus ultunensis

1633

Lactobacillus vaginalis

*

194326

Lactobacillus versmoldensis

*

238015

Lactobacillus vini

1358

Lactococcus lactis

*

5671

Leishmania infantum

*

5664

Leishmania major

40542

Leptotrichia buccalis

157692

Leptotrichia goodfellowii

157688

Leptotrichia hofstadii

*

157691

Leptotrichia shahii

*

157687

Leptotrichia wadei

33964

Leuconostoc citreum

*

1244

Leuconostoc gelidum

136609

Leuconostoc kimchii

1245

Leuconostoc mesenteroides

1642

Listeria innocua

1639

Listeria monocytogenes

168384

Marvinbryantia formatexigens

*

437897

Megamonas funiformis

158847

Megamonas hypermegale

*

491921

Megamonas rupellensis

187326

Megasphaera micronuciformis

*

1134405

Melioribacter roseus

*

33970

Melissococcus plutonius

381

Mesorhizobium loti

43687

Metallosphaera sedula

83816

Methanobrevibacter ruminantium

2173

Methanobrevibacter smithii

83171

Methanocaldococcus fervens

67760

Methanocaldococcus infernus

2190

Methanocaldococcus jannaschii

*

667126

Methanocaldococcus villosus

73913

Methanocaldococcus vulcanius

29291

Methanococcoides burtonii

42879

Methanococcus aeolicus

39152

Methanococcus maripaludis

2187

Methanococcus vannielii

2188

Methanococcus voltae

83984

Methanocorpusculum labreanum

2198

Methanoculleus marisnigri

2322

Methanohalobium evestigatum

2176

Methanohalophilus mahii

54120

Methanolacinia petrolearia

2320

Methanopyrus kandleri

2214

Methanosarcina acetivorans

2208

Methanosarcina barkeri

2209

Methanosarcina mazei

2317

Methanosphaera stadtmanae

475088

Methanosphaerula palustris

2203

Methanospirillum hungatei

145263

Methanothermobacter marburgensis

145262

Methanothermobacter thermautotrophicus

Methanobacterium thermautotrophicum

155863

Methanothermococcus okinawensis

2180

Methanothermus fervidus

2224

Methanothrix thermoacetophila

*

213185

Methanotorris formicicus

*

2189

Methanotorris igneus

511746

Methylacidiphilum infernorum

105560

Methylibium petroleiphilum

405

Methylobacillus flagellatus

114616

Methylobacterium nodulans

199596

Methylocella silvestris

414

Methylococcus capsulatus

392484

Methylophaga thiooxydans

Methylophaga thiooxidans

408

Methylorubrum extorquens

Methylobacterium dichloromethanicum, Methylobacterium chloromethanicum

426

Methylosinus trichosporium

359408

Methylotenera mobilis

1270

Micrococcus luteus

52226

Mitsuokella multacida

1525

Moorella thermoacetica

480

Moraxella catarrhalis

1764

Mycobacterium avium

1769

Mycobacterium leprae

1773

Mycobacterium tuberculosis

1772

Mycolicibacterium smegmatis

2110

Mycoplasma agalactiae

*

45363

Mycoplasma alkalescens

47687

Mycoplasma alligatoris

*

2094

Mycoplasma arginini

2111

Mycoplasma arthritidis

*

51363

Mycoplasma auris

28903

Mycoplasma bovis

2095

Mycoplasma capricolum

*

114881

Mycoplasma columbinum

45361

Mycoplasma conjunctivae

50052

Mycoplasma crocodyli

*

171284

Mycoplasma cynos

2115

Mycoplasma fermentans

2096

Mycoplasma gallisepticum

2097

Mycoplasma genitalium

29501

Mycoplasma haemofelis

2098

Mycoplasma hominis

2099

Mycoplasma hyopneumoniae

2100

Mycoplasma hyorhinis

*

2116

Mycoplasma iowae

2105

Mycoplasma leachii

*

171287

Mycoplasma moatsii

2118

Mycoplasma mobile

2102

Mycoplasma mycoides

28227

Mycoplasma penetrans

2104

Mycoplasma pneumoniae

2107

Mycoplasma pulmonis

*

2123

Mycoplasma putrefaciens

2109

Mycoplasma synoviae

*

51365

Mycoplasma yeatsii

*

1183151

Myroides injenensis

*

76832

Myroides odoratimimus

*

256

Myroides odoratus

*

27289

Naumovozyma dairenensis

484

Neisseria flavescens

485

Neisseria gonorrhoeae

488

Neisseria mucosa

*

490

Neisseria sicca

*

28449

Neisseria subflava

*

626933

Odoribacter laneus

28118

Odoribacter splanchnicus

Bacteroides splanchnicus

*

351091

Oscillibacter valericigenes

847

Oxalobacter formigenes

1464

Paenibacillus larvae

1406

Paenibacillus polymyxa

*

1505

Paeniclostridium sordellii

Clostridium sordellii

823

Parabacteroides distasonis

Bacteroides distasonis

*

328812

Parabacteroides goldsteinii

Bacteroides goldsteinii

387661

Parabacteroides johnsonii

46503

Parabacteroides merdae

Bacteroides merdae

148447

Paraburkholderia phymatum

Burkholderia phymatum

*

1490

Paraclostridium bifermentans

Clostridium bifermentans

266

Paracoccus denitrificans

208216

Parvularcula bermudensis

1254

Pediococcus acidilactici

19

Pelobacter carbinolicus

29543

Pelobacter propionicus

110500

Pelotomaculum thermopropionicum

*

507750

Peptoniphilus duerdenii

54005

Peptoniphilus harei

Peptostreptococcus harei

*

33030

Peptoniphilus indolicus

33031

Peptoniphilus lacrimalis

Peptostreptococcus lacrimalis

*

1175452

Peptoniphilus rhinitidis

*

1111134

Peptoniphilus sp. BV3C26

Clostridiales bacterium BV3C26

*

671216

Peptoniphilus sp. oral taxon 836

*

1268254

Peptoniphilus timonensis

1261

Peptostreptococcus anaerobius

341694

Peptostreptococcus stomatis

82076

Picrophilus torridus

*

5821

Plasmodium berghei

*

5833

Plasmodium falciparum

*

5850

Plasmodium knowlesi

*

5855

Plasmodium vivax

*

5861

Plasmodium yoelii

*

37453

Polaribacter franzmannii

*

531

Polaribacter irgensii

28123

Porphyromonas asaccharolytica

837

Porphyromonas gingivalis

419005

Prevotella amnii

242750

Prevotella bergensis

28125

Prevotella bivia

77095

Prevotella bryantii

28126

Prevotella buccae

28127

Prevotella buccalis

165179

Prevotella copri

28130

Prevotella disiens

189722

Prevotella marshii

28132

Prevotella melaninogenica

282402

Prevotella multiformis

28134

Prevotella oralis

28135

Prevotella oris

839

Prevotella ruminicola

228604

Prevotella salivae

386414

Prevotella timonensis

28137

Prevotella veroralis

1744

Propionibacterium freudenreichii

*

294710

Proteiniphilum acetatigenes

584

Proteus mirabilis

102862

Proteus penneri

182210

Pseudodesulfovibrio aespoeensis

Desulfovibrio aespoeensis

*

879567

Pseudodesulfovibrio piezophilus

Desulfovibrio piezophilus

106588

Pseudoflavonifractor capillosus

Bacteroides capillosus

287

Pseudomonas aeruginosa

312306

Pseudomonas entomophila

294

Pseudomonas fluorescens

300

Pseudomonas mendocina

303

Pseudomonas putida

29438

Pseudomonas savastanoi

316

Pseudomonas stutzeri

317

Pseudomonas syringae

*

251

Psychroflexus gondwanensis

638849

Pyramidobacter piscolens

13773

Pyrobaculum aerophilum

181486

Pyrobaculum calidifontis

29292

Pyrococcus abyssi

2261

Pyrococcus furiosus

53953

Pyrococcus horikoshii

329

Ralstonia pickettii

384

Rhizobium leguminosarum

1061

Rhodobacter capsulatus

1076

Rhodopseudomonas palustris

1085

Rhodospirillum rubrum

29549

Rhodothermus marinus

Rhodothermus obamensis

*

301301

Roseburia hominis

166486

Roseburia intestinalis

360807

Roseburia inulinivorans

2434

Roseobacter denitrificans

*

29355

Ruminiclostridium cellobioparum

Clostridium termitidis, Ruminiclostridium cellobioparum subsp. termitidis

1521

Ruminiclostridium cellulolyticum

Clostridium cellulolyticum

29362

Ruminiclostridium papyrosolvens

Clostridium papyrosolvens

1264

Ruminococcus albus

40518

Ruminococcus bromii

1265

Ruminococcus flavefaciens

33038

Ruminococcus gnavus

46228

Ruminococcus lactaris

33039

Ruminococcus torques

2287

Saccharolobus solfataricus

Sulfolobus solfataricus

*

4932

Saccharomyces cerevisiae

28901

Salmonella enterica

1660

Schaalia odontolytica

Actinomyces odontolyticus

671224

Selenomonas artemidis

135080

Selenomonas flueggei

135083

Selenomonas noxia

*

971

Selenomonas ruminantium

69823

Selenomonas sputigena

192073

Shewanella denitrificans

24

Shewanella putrefaciens

621

Shigella boydii

622

Shigella dysenteriae

623

Shigella flexneri

Escherichia/Shigella flexneri

624

Shigella sonnei

382

Sinorhizobium meliloti

63612

Sodalis glossinidius

2057

Sphaerobacter thermophilus

332056

Sphingobium japonicum

154

Spirochaeta thermophila

*

216933

Spiroplasma chrysopicola

*

216936

Spiroplasma diminutum

*

2134

Spiroplasma melliferum

*

216945

Spiroplasma syrphidicola

*

2145

Spiroplasma taiwanense

1280

Staphylococcus aureus

29388

Staphylococcus capitis

1281

Staphylococcus carnosus

1282

Staphylococcus epidermidis

1283

Staphylococcus haemolyticus

1290

Staphylococcus hominis

*

42858

Staphylococcus lentus

28035

Staphylococcus lugdunensis

*

45972

Staphylococcus pasteuri

283734

Staphylococcus pseudintermedius

29385

Staphylococcus saprophyticus

1292

Staphylococcus warneri

40324

Stenotrophomonas maltophilia

1311

Streptococcus agalactiae

1328

Streptococcus anginosus

113107

Streptococcus australis

*

439220

Streptococcus caballi

*

1329

Streptococcus canis

*

76860

Streptococcus constellatus

*

1333

Streptococcus criceti

45634

Streptococcus cristatus

Streptococcus oligofermentans

*

102886

Streptococcus didelphis

1317

Streptococcus downei

1334

Streptococcus dysgalactiae

*

155680

Streptococcus entericus

1336

Streptococcus equi

1335

Streptococcus equinus

Streptococcus bovis

*

1345

Streptococcus ferus

315405

Streptococcus gallolyticus

1302

Streptococcus gordonii

*

439219

Streptococcus henryi

*

380397

Streptococcus ictaluri

102684

Streptococcus infantarius

68892

Streptococcus infantis

*

1346

Streptococcus iniae

*

1338

Streptococcus intermedius

*

150055

Streptococcus lutetiensis

Streptococcus infantarius subsp. coli

*

1339

Streptococcus macacae

*

59310

Streptococcus macedonicus

Streptococcus gallolyticus subsp. macedonicus

*

269666

Streptococcus marimammalium

*

313439

Streptococcus massiliensis

*

400065

Streptococcus merionis

*

229549

Streptococcus minor

28037

Streptococcus mitis

1309

Streptococcus mutans

1303

Streptococcus oralis

Streptococcus tigurinus, Streptococcus oralis subsp. tigurinus

*

114652

Streptococcus orisratti

*

82806

Streptococcus ovis

1318

Streptococcus parasanguinis

Streptococcus gallolyticus subsp. pasteurianus

*

1348

Streptococcus parauberis

*

197614

Streptococcus pasteurianus

68891

Streptococcus peroris

1313

Streptococcus pneumoniae

*

1340

Streptococcus porcinus

*

257758

Streptococcus pseudopneumoniae

361101

Streptococcus pseudoporcinus

1314

Streptococcus pyogenes

*

1341

Streptococcus ratti

1304

Streptococcus salivarius

1305

Streptococcus sanguinis

*

1310

Streptococcus sobrinus

*

1169673

Streptococcus sp. GMD4S

1307

Streptococcus suis

1308

Streptococcus thermophilus

*

55085

Streptococcus thoraltensis

1349

Streptococcus uberis

*

149016

Streptococcus urinalis

1343

Streptococcus vestibularis

1911

Streptomyces griseus

1916

Streptomyces lividans

1938

Streptomyces viridochromogenes

214851

Subdoligranulum variabile

*

78120

Succinispira mobilis

2285

Sulfolobus acidocaldarius

39766

Sulfurimonas denitrificans

40545

Sutterella wadsworthensis

119484

Syntrophobacter fumaroxidans

51197

Syntrophobotulus glycolicus

863

Syntrophomonas wolfei

86170

Syntrophothermus lipocalidus

316277

Syntrophus aciditrophicus

*

36841

Terrisporobacter glycolicus

Clostridium glycolicum

*

1071379

Tetrapisispora blattae

*

113608

Tetrapisispora phaffii

*

29323

Thermoanaerobacter brockii

*

1757

Thermoanaerobacter ethanolicus

*

1125974

Thermoanaerobacter indiensis

*

108150

Thermoanaerobacter italicus

*

583357

Thermoanaerobacter mathranii

*

496866

Thermoanaerobacter pseudethanolicus

*

106578

Thermoanaerobacter siderophilus

*

1516

Thermoanaerobacter thermohydrosulfuricus

Clostridium thermohydrosulfuricum

*

46354

Thermoanaerobacter wiegelii

*

28896

Thermoanaerobacterium saccharolyticum

*

1517

Thermoanaerobacterium thermosaccharolyticum

*

29329

Thermoanaerobacterium xylanolyticum

Thermoanaerobacter xylanolyticum

2021

Thermobifida fusca

*

1510

Thermoclostridium stercorarium

Clostridium stercorarium

55802

Thermococcus barophilus

187878

Thermococcus gammatolerans

311400

Thermococcus kodakarensis

342948

Thermococcus onnurineus

172049

Thermococcus sibiricus

*

501497

Thermodesulfatator atlanticus

*

171695

Thermodesulfatator indicus

*

1295609

Thermodesulfobacterium geofontis

*

886

Thermodesulfobacterium thermophilum

*

184064

Thermodesulfobium narugense

2303

Thermoplasma acidophilum

2336

Thermotoga maritima

2337

Thermotoga neapolitana

*

271

Thermus aquaticus

*

88189

Thermus igniterrae

*

540988

Thermus islandicus

*

56957

Thermus oshimai

*

37636

Thermus scotoductus

274

Thermus thermophilus

36861

Thiobacillus denitrificans

*

163

Treponema bryantii

*

88058

Treponema primitia

*

167

Treponema succinifaciens

*

5722

Trichomonas vaginalis

*

63417

Trichophyton verrucosum

*

5691

Trypanosoma brucei

*

5693

Trypanosoma cruzi

*

154288

Turicibacter sanguinis

29361

Tyzzerella nexilis

Clostridium nexile

134821

Ureaplasma parvum

2130

Ureaplasma urealyticum

*

184870

Varibaculum cambriense

39777

Veillonella atypica

39778

Veillonella dispar

29466

Veillonella parvula

666

Vibrio cholerae

672

Vibrio vulnificus

*

1482

Virgibacillus halodenitrificans

*

1583

Weissella confusa

51229

Wigglesworthia glossinidia

844

Wolinella succinogenes

339

Xanthomonas campestris

2371

Xylella fastidiosa

542

Zymomonas mobilis

human colonocyte

human goblet cell

human hepatocyte

*

mouse goblet cell

*

mouse hepatocyte

*

mouse intestinal cell