Online-only Table 4 List of small-molecule metabolites and macromolecules in NJC19.
From: Large-scale metabolic interaction network of the mouse and human gut microbiota
Compound name | KEGG compound identifier | |
|---|---|---|
D-Glucose (Glucose) | C00031 | |
Sucrose | C00089 | |
D-Fructose (Fructose) | C00095 | |
Glycerol | C00116 | |
D-Ribose (Ribose) | C00121 | |
D-Galactose | C00124 | |
N-Acetyl-D-Glucosamine (N-Acetylglucosamine) | C00140 | |
D-Mannose (Mannose) | C00159 | |
D-Xylose (Xylose) | C00181 | |
Cellobiose | C00185 | |
D-Glucuronic acid (D-Glucuronate) | C00191 | |
Maltose | C00208 | |
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose) | C00216, C00259 | |
Lactose | C00243 | |
L-Sorbose (Sorbose) | C00247 | |
Isomaltose | C00252 | |
D-Gluconate (D-Gluconic acid, Gluconate) | C00257 | |
D-Glycerate (Glycerate, [R]-Glycerate, Glyceric acid) | C00258 | |
N-Acetylneuraminic acid (N-acetylneuraminate, Neu5Ac, Sialic acid) | C00270 | |
D-Xylulose (Xylulose, L-Xylulose) | C00310, C00312 | |
D-Glucosamine (Glucosamine) | C00329 | |
D-Galacturonate | C00333 | |
Xylitol | C00379 | |
D-Mannitol (Mannitol) | C00392 | |
Ribitol (Adonitol) | C00474 | |
D-Lyxose (L-Lyxose) | C00476, C01508 | |
Raffinose | C00492 | |
Erythritol | C00503 | |
L-Rhamnose (Rhamnose, D-Rhamnose) | C00507, C01684 | |
L-Arabitol (L-Arabinitol, D-Arabitol) | C00532, C01904 | |
D-Tagaturonate | C00558 | |
N-Acetyl-D-mannosamine | C00645 | |
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide) | C00721, C01835, C01935, C01936, C02052 | |
L-Idonate | C00770 | |
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol) | C00794, C01722 | |
D-Tagatose | C00795 | |
D-Fructuronate | C00905 | |
L-Fucose | C01019 | |
N-Acetylgalactosamine (N-Acetyl-D-galactosamine) | C01074 | |
Trehalose | C01083 | |
Stachyose | C01613 | |
Galactitol (Dulcitol) | C01697 | |
Palatinose (Isomaltulose) | C01742 | |
Cellotetraose (Cellohexaose, Cellopentaose, Cellotriose) | C02013, C06217, C06218, C06219 | |
D-Galactosamine (Galactosamine) | C02262 | |
Melibiose | C05402 | |
D-Psicose | C06468 | |
L-iduronate | C06472 | |
D-Turanose | C19636 | |
FOS (Fructooligosaccharide) | - | |
XOS (Xylooligosaccharide) | - | |
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate) | C00025, C00217 | |
L-Glycine (Glycine) | C00037 | |
L-Alanine (D-Alanine, Alanine) | C00041, C00133 | |
L-Lysine (Lysine, D-Lysine) | C00047, C00739 | |
L-Aspartate (Aspartate, D-Aspartate) | C00049, C00402 | |
L-Arginine (Arginine) | C00062 | |
L-Glutamine (D-Glutamine, Glutamine) | C00064, C00819 | |
L-Serine (Serine, D-Serine) | C00065, C00740 | |
L-Methionine (D-Methionine) | C00073, C00855 | |
L-Ornithine (Ornithine) | C00077 | |
L-Tryptophan (Tryptophan) | C00078 | |
L-Phenylalanine (Phenylalanine, D-Phenylalanine) | C00079, C02265 | |
L-Tyrosine (Tyrosine) | C00082 | |
L-Cysteine (Cysteine, D-Cysteine) | C00097, C00793 | |
beta-alanine (3-Aminopropionate) | C00099 | |
L-Leucine (Leucine) | C00123 | |
L-Histidine (Histidine) | C00135 | |
L-Proline (Proline, D-Proline) | C00148, C00763 | |
L-Asparagine (Asparagine) | C00152 | |
L-Valine (Valine, D-Valine) | C00183, C06417 | |
L-Threonine (Threonine) | C00188 | |
L-Homoserine | C00263 | |
L-Carnitine (D-Carnitine) | C00318, C15025 | |
L-Isoleucine (Isoleucine) | C00407 | |
L-Selenocysteine | C05688 | |
Uracil | C00106 | |
Adenine | C00147 | |
Thymine | C00178 | |
Adenosine | C00212 | |
Thymidine | C00214 | |
Guanine | C00242 | |
Inosine | C00294 | |
Uridine | C00299 | |
Cytosine | C00380 | |
Xanthine | C00385 | |
Guanosine | C00387 | |
Cytidine | C00475 | |
Ascorbic acid (Vitamin C, L-Ascorbate, Ascorbate) | C00072 | |
Choline | C00114 | |
Biotin (Vitamin B7) | C00120 | |
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III]) | C00194 | |
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6) | C00250, C00314, C00534 | |
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3) | C00153, C00253 | |
Riboflavin (Vitamin B2) | C00255 | |
Thiamine (Vitamin B1, Thiamin) | C00378 | |
Retinol (Vitamin A) | C00473 | |
Folic acid (Folate, Vitamin B9) | C00504 | |
Retinoate | C00777 | |
Menaquinone (Vitamin K2) | C00828 | |
Pantothenic acid (Vitamin B5, Pantothenate) | C00864 | |
Phylloquinone (Vitamin K1) | C02059 | |
alpha-Tocopherol (Vitamin E, alpha-Tocotrienol) | C02477, C14155, C14153 | |
Arachidonate | C00219 | |
Cholecalciferol (Vitamin D3, Vitamin D2) | C05443, C05441 | |
Palmitate (Palmitic acid, Hexadecanoic acid, Hexadecanoate) | C00249 | |
1,2-diacylglycerol (1-acylglycerol, Monoacylglycerol, Monoglyceride, Monoacylglycerol, Diacylglycerol) | C00641, C01885, C00165 | |
Oleic acid ([9Z]-Octadecenoic acid) | C00712 | |
Lipoic acid (Lipoate) | C00725 | |
Stearic acid (Stearate, Octadecanoate) | C01530 | |
Decanoic acid (Decanoate) | C01571 | |
Caproate (Hexanoate) | C01585 | |
Linoleic acid (Omega-6 fatty acid) | C01595 | |
Pelargonic acid (Pelargonate, Nonanoic acid) | C01601 | |
Octanoate (Caprylic acid) | C06423 | |
Myristic acid (Tetradecanoic acid, Tetradecanoate) | C06424 | |
Arachidate (Arachidic acid) | C06425 | |
alpha-Linolenic acid (Omega-3 fatty acid, eicosapentaenoic acid) | C06427, C12083 | |
Acetate | C00033 | |
Propanoate (Propionate) | C00163 | |
Butyrate | C00246 | |
Valerate (Pentanoic acid, Pentanoate) | C00803 | |
Isobutyrate (2-Methylpropanoic acid) | C02632 | |
Isovalerate (3-Methylbutanoic acid) | C08262 | |
Methanol | C00132 | |
Inositol (myo-Inositol, Inositol 1-phosphate, Myo-inositol phosphate) | C00137, C01177 | |
Phenol | C00146 | |
Acetoin (3-hydroxybutanone, acetyl methyl carbinol, [R]-Acetoin) | C00466, C00810 | |
Ethanol | C00469 | |
Benzyl alcohol | C00556 | |
1,2-propanediol (Propene diol, Propylene glycol, [R]-1,2-propanediol, [R]-propane-1,2-diol, [S]-1,2-propanediol, [S]-propane-1,2-diol) | C00583, C02912, C02917 | |
1,2-Ethanediol (Ethylene glycol) | C01380 | |
Isopropanol (2-Propanol) | C01845 | |
1,3-Propanediol | C02457 | |
[R,R]-2,3-Butanediol ([R,R]-Butanediol, [S,S]-2,3-Butanediol, [S,S]-Butanediol) | C03044, C03046 | |
Propanol (n-propanol, 1-Propanol) | C05979 | |
Isobutyl alcohol (isobutanol, 2-Methyl-1-propanol) | C14710 | |
Butanol | C06142 | |
Pentanol | C16834 | |
Formaldehyde | C00067 | |
Acetaldehyde | C00084 | |
Benzaldehyde | C00261 | |
Propanal | C00479 | |
Putrescine | C00134 | |
Ethanolamine (Phosphatidylethanolamine) | C00189, C00350 | |
Methylamine (Monomethylamine) | C00218 | |
Spermidine | C00315 | |
Histamine | C00388 | |
Tryptamine | C00398 | |
Tyramine | C00483 | |
Dimethylamine | C00543 | |
Trimethylamine | C00565 | |
Spermine | C00750 | |
Trimethylamine N-oxide (Trimethylamine-N-oxide) | C01104 | |
Cadaverine | C01672 | |
Phenylethylamine | C02455 | |
Butylamine | C18706 | |
Urea | C00086 | |
Acetone | C00207 | |
Indole | C00463 | |
Toluene | C01455 | |
p-Cresol (4-methylphenol, 4-cresol) | C01468 | |
Anthranilate (o-amino-benzoic acid) | C00108 | |
Benzoate | C00180 | |
4-Aminobenzoate (para-aminobenzoic acid, PABA, p-Aminobenzoate) | C00568 | |
Indole-3-acetate (Indoleacetate) | C00954 | |
Ferulate | C01494 | |
Hippurate | C01586 | |
3-phenylpropionic acid (Phenylpropanoate, 3-phenylpropionate) | C05629 | |
Vanillate | C06672 | |
Phenylacetate | C07086 | |
Pyruvate | C00022 | |
alpha-ketoglutarate (2-oxoglutarate) | C00026 | |
Oxaloacetate | C00036 | |
Succinate | C00042 | |
Glyoxylate (Glyoxylic acid, Glyoxalate) | C00048 | |
Formate | C00058 | |
2-Oxobutyrate (Alpha-ketobutyrate, 2-Oxobutanoate) | C00109 | |
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate) | C00149, C00497 | |
Fumarate | C00122 | |
Citrate | C00158 | |
Glycolate | C00160 | |
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate) | C00186, C00256 | |
Oxalate | C00209 | |
Taurine | C00245 | |
Orotic acid (Orotate) | C00295 | |
4-Aminobutyrate (GABA) | C00334 | |
Malonate | C00383 | |
cis-Aconitate (trans-Aconitate, trans-Aconitic acid) | C00417, C02341 | |
5-Aminovalerate | C00431 | |
Glutarate | C00489 | |
Itaconate | C00490 | |
Shikimate | C00493 | |
meso-Tartrate (meso-Tartaric acid, Tartrate, L-tartrate, L-Tartaric acid) | C00552, C00898 | |
Cholic acid (Cholate) | C00695 | |
Betaine (Glycine betaine) | C00719 | |
Crotonate (2-Butenoate, 2-Butenoic acid, Crotonic acid, 3-Methylacrylic acid) | C01771 | |
Glycocholate | C01921 | |
2-Aminobutyric acid (2-Aminobutyrate) | C02261, C02356 | |
Chenodeoxycholic acid (Chenodeoxycholate) | C02528 | |
Taurolithocholate | C02592 | |
Pimelate | C02656 | |
Lithocholic acid | C03990 | |
Deoxycholic acid | C04483 | |
Taurocholate | C05122 | |
Isethionate | C05123 | |
Taurodeoxycholate | C05463 | |
Glycodeoxycholate | C05464 | |
Taurochenodeoxycholate | C05465 | |
Glycochenodeoxycholate | C05466 | |
Adipate | C06104 | |
Glycolithocholate | C15557 | |
2-methylbutyrate (2-methylbutanoic acid) | C18319 | |
H2O2 | C00027 | |
Zn2+ (Zinc) | C00038 | |
Sulfate (Sulfuric acid, Sulfite) | C00059, C00094 | |
Cu2+ (Copper) | C00070 | |
Ca2+ (Calcium) | C00076 | |
K+ (Potassium) | C00238 | |
Nitrate (NO3-) | C00244 | |
Bicarbonate (HCO3-, H2CO3, Carbonic acid, Carbonate) | C00288 | |
Mg2+ (Magnesium) | C00305 | |
Thiosulfate | C00320 | |
Dimethyl sulfide (Methyl sulfide) | C00580 | |
Cl− (Chloride) | C00698 | |
I− (Iodide) | C00708 | |
Na+ (Sodium) | C01330 | |
Selenite | C05684 | |
Fe3+ (Ferric ion, Fe2+, Ferrous ion) | C14819, C14818 | |
Sulfur (Elemental sulfur) | C00087 | |
CO2 | C00011 | |
NH3 (Ammonia, NH4+, Ammonium) | C00014 | |
Carbon monoxide (CO) | C00237 | |
H2 (Hydrogen) | C00282 | |
H2S (HS-) | C00283 | |
Nitric Oxide (NO) | C00533 | |
Nitrite (NO2-) | C00088 | |
N2 | C00697 | |
Methane (CH4) | C01438 | |
Dichloromethane (Methylene chloride) | C02271 | |
DNA RNA Polynucleotide | C00039, C00046, C00419 | |
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch, Glycogen) | C00317, C00369, C00480, C00718, C00182 | |
Polypeptide | C00403 | |
Triglyceride | C00422 | |
Chitin | C00461 | |
Mannan | C00464 | |
Hyaluronan (Hyaluronate, Hyaluronic acid) | C00518 | |
Arabinogalactan | C00569 | |
Chondroitin 4-sulfate (Chondroitin 6-sulfate) | C00634, C00635 | |
Pectin | C00714 | |
Cellulose (Beta-D-glucan) | C00760 | |
Fructan (Inulin, Levan) | C01355, C03323, C06215 | |
Galactan | C05796 | |
Mucin (Mucus Glycoprotein) | C02705 | |
* | Hemicellulose, not specified | — |
Xylan | C00707 | |
Arabinan | C02474 | |
Hyodeoxycholic acid | — | |
alpha-Muricholic acid | C17647 | |
beta-Muricholic acid | C17726 | |
omega-Muricholic acid | C17727 | |
Tauro-b-muricholic acid | — | |
Tauroursodeoxycholic acid | C16868 | |
Ursodeoxycholic acid | C07880 | |
Indole-3-lactic acid | — | |
Indole-3-carboxaldehyde | C08493 | |
7-Oxodeoxycholic acid | — | |
7-Oxolithocholic acid | — | |
Carnosine | C00386 | |
Glycylsarcosine | — | |
Prolylglycine | — | |
Glycyl-Phenylalanine | — | |
Levomefolic acid | — | |
H+ | C00080 | |
Leucyl-leucine | C11332 | |
Alanylalanine | — | |
Glycylproline | — | |
Glycyl-leucine | C02155 | |
Leucylglycine | — | |
L-Dopa | C00355 | |
Lysophosphatidylcholine (1-Lysophosphatidylcholine, 2-Lysophosphatidylcholine) | C04230, C04233 | |
Cholesterol | C00187 | |
Glycylglycine | C02037 | |
