Table 2 Genome assembling using PacBio SMRT sequencing in C. rogercresseyi.

From: Chromosome-scale genome assembly of the sea louse Caligus rogercresseyi by SMRT sequencing and Hi-C analysis

Label

Assembly statistics

Number of contigs (> = 0 bp)

25,608

Number of contigs (> = 1000 bp)

25,608

Number of contigs (> = 5000 bp)

22,577

Number of contigs (> = 10000 bp)

18,391

Number of contigs (> = 25000 bp)

9,054

Number of contigs (> = 50000 bp)

3,063

Total length (> = 0 bp)

727,321,577

Total length (> = 1000 bp)

727,321,577

Total length (> = 5000 bp)

717,854,023

Total length (> = 10000 bp)

686,707,002

Total length (> = 25000 bp)

529,822,257

Total length (> = 50000 bp)

321,900,412

Number of contigs

25,608

Largest contig

6,415,100

Total length

727,321,577

GC (%)

35.55

N50

43,366

N75

23,550

L50

3,963

L75

9,700

Number of N’s per 100 kbp

0.00

  1. *All statistics are based on contigs of size > = 500 bp, unless otherwise noted (e.g., “# contigs (> = 0 bp)” and “Total length (> = 0 bp)” include all contigs).
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