Table 4 Statistics of genome assembly and Hi-C analysis for the sea louse C. rogercresseyi.
Label | Statistics |
|---|---|
PacBio assembly | |
Assembly size | 519,118,635 |
Contig (CTG) N50 | 38,179 |
CTGs | 17,711 |
CTGs > 10KB | 15,186 |
CTGs > 5KB | 17,318 |
Hi-C mapping | |
Total read pairs (RPs) analyzed | 238,645,537 |
High quality (HQ)* RPs | 9,24% |
HQ RPs > 10KB apart (CTGs > 10KB) | 5.32% |
Intercontig HQ RPs (CTGs > 10KB) | 46.70% |
Same strand HQ RPs | 7.80% |
Split reads | 12.55% |
