Online-only Table 1 Acquisition parameters for the different scans acquired across all three datasets.

From: The Amsterdam Open MRI Collection, a set of multimodal MRI datasets for individual difference analyses

 

ID1000

PIOP1

PIOP2

T1-weighted images

Number of scans

3

1

1

Scan technique

3D MPRAGE

3D MPRAGE

3D MPRAGE

Number of signals (repetitions)

1

2

2

Fat suppression

Yes

Yes

Yes

Coverage

Whole-brain*

Whole-brain*

Whole-brain*

FOV (RL/AP/FH; mm)

160 × 256 × 256

188 × 240 × 220

188 × 240 × 220

Voxel size (mm)

1 × 1 × 1

1 × 1 × 1

1 × 1 × 1

TR/TE (ms)

8.1/3.7

8.5/3.9

8.5/3.9

Water-fat shift (pix)

2.268

2.268

2.268

Bandwidth (Hz/pix)

191.5

191.5

191.5

Flip angle (deg)

8

8

8

Phase accell. factor (SENSE)

1.5 (RL)

2.5 (RL)/2 (FH)

2.5 (RL)/2 (FH)

Acquisition direction

Sagittal

Axial

Axial

Duration

5 min 58 sec

6 min 3 sec

6 min 3

Phase-difference fieldmap

Scan technique

n/a

n/a

3D MPRAGE

Fat suppression

n/a

n/a

No

Coverage

n/a

n/a

Whole-brain

FOV (RL/AP/FH; mm)

n/a

n/a

208 × 256 × 256

Voxel size (mm)

n/a

n/a

2 × 2 × 2

TR/TE (ms)

n/a

n/a

11/3

Delta TE (ms)

n/a

n/a

5

Water-fat shift (pix)

n/a

n/a

1.134

Bandwidth (Hz/pix)

n/a

n/a

383.0

Flip angle (deg)

n/a

n/a

8

Phase accell. factor (SENSE)

n/a

n/a

2.5 (RL)/2 (FH)

Acquisition direction

n/a

n/a

Axial

Duration

n/a

n/a

1 min 44

Functional (BOLD) MRI

 

MB scans**

Seq. scans**

 

Number of scans

1

2

3

4

Scan technique

GE-EPI

GE-EPI

GE-EPI

GE-EPI

Coverage

Whole-brain

Whole-brain

Whole-brain

 

FOV (RL/AP/FH)

138 × 192 × 192

240 × 240 × 118

240 × 240 × 122

240 × 240 × 122

Voxel size (mm.)

3 × 3 × 3

3 × 3 × 3

3 × 3 × 3

3 × 3 × 3

Matrix size

64 × 64

80 × 80

80 × 80

80 × 80

Nr. of slices

40

36

37

37

Slice gap (mm.)

0.3

0.3

0.3

0.3

TR/TE (ms.)

2200/28

750/28

2000

28

Water-fat shift (pix.)

11.575

11.001

11.502

11.502

Bandwidth (Hz/Pix)

34.6

39.5

37.8

37.8

Flip angle (deg.)

90

60

76.1

76.1

Phase accell. factor (SENSE)

0

2 (AP)

2 (AP)

2 (AP)

Phase encoding direction

P>> A

P>> A

P>> A

P>> A

Multiband acceleration factor

n/a

3

n/a

n/a

Multiband FOV shift

n/a

None

n/a

n/a

Slice encoding direction

L>> R (sequential)

F>> H (sequential)

F>> H (sequential)

F>> H (sequential)

Nr. of dummy scans

2

2

2

2

Dynamic stabilization

none

enhanced

enhanced

enhanced

Diffusion-weighted images

Number of scans

3

1

1

Scan technique

SE-DWI

SE-DWI

SE-DWI

Shell

Single

Single

Single

Nr. of b0 images

1

1

1

Nr. of diffusion-weighted dirs.

32

32

32

Sampling scheme

Half sphere

Half sphere

Half sphere

DWI b-value

1000 s/mm2

1000 s/mm2

1000 s/mm2

Coverage

Whole-brain (partial cerebellum)

Whole-brain (partial cerebellum)

Whole-brain (partial cerebellum)

FOV (RL/AP/FH)

224 × 224 × 120

224 × 224 × 120

224 × 224 × 120

Voxel size (mm.)

2 × 2 × 2

2 × 2 × 2

2 × 2 × 2

Matrix size

112 × 112

112 × 112

112 × 112

Nr. of slices

60

60

60

Slice gap (mm.)

0

0

0

TR/TE (ms.)

6312***/74

7387***/86

7387***/86

Water-fat shift (pix.)

13.539

18.926

18.926

Bandwidth (Hz/pix.)

33.8

22.9

22.9

Flip angle (deg.)

90

90

90

Phase accell. (SENSE)

3 (AP)

2 (AP)

2 (AP)

Phase encoding dir.

P>> A

P>> A

P>> A

Slice encoding direction

F>> H

F>> H

F>> H

Duration

4 min 49 sec

5 min 27 sec

5 min 27 sec

  1. MPRAGE: Magnetization Prepared Rapid Gradient Echo, SE-DWI: Spin-Echo Diffusion-Weighted Imaging, FOV: field-of-view, RL: right-left, AP: anterior-posterior, FH: feet-head, GE-EPI: gradient echo-echo-planar imaging, TR: time to repetition, TE: time to echo, n/a: not applicable, Seq.: sequential (non-multiband), MB: multiband (i.e., simultaneous slice excitation). * Whole-brain coverage included the brain-stem and cerebellum, unless otherwise stated. ** MB scans were acquired for the face perception and resting-state paradigms of PIOP2. Sequential scans were acquired for the movie watching (ID1000), working memory, emotion matching, gender stroop, and anticipation, stop signal paradigms (PIOP1 and PIOP2). *** DWI scans were acquired with the shortest possible TR (“shortest” setting on Philips scanners), causing the actual TR values to vary from scan to scan. The TRs reported in this table reflect the median TR across all DWI scans per dataset (see the Raw data standardization section for more information).