Online-only Table 1 Acquisition parameters for the different scans acquired across all three datasets.
ID1000 | PIOP1 | PIOP2 | ||
---|---|---|---|---|
T1-weighted images | ||||
Number of scans | 3 | 1 | 1 | |
Scan technique | 3D MPRAGE | 3D MPRAGE | 3D MPRAGE | |
Number of signals (repetitions) | 1 | 2 | 2 | |
Fat suppression | Yes | Yes | Yes | |
Coverage | Whole-brain* | Whole-brain* | Whole-brain* | |
FOV (RL/AP/FH; mm) | 160 × 256 × 256 | 188 × 240 × 220 | 188 × 240 × 220 | |
Voxel size (mm) | 1 × 1 × 1 | 1 × 1 × 1 | 1 × 1 × 1 | |
TR/TE (ms) | 8.1/3.7 | 8.5/3.9 | 8.5/3.9 | |
Water-fat shift (pix) | 2.268 | 2.268 | 2.268 | |
Bandwidth (Hz/pix) | 191.5 | 191.5 | 191.5 | |
Flip angle (deg) | 8 | 8 | 8 | |
Phase accell. factor (SENSE) | 1.5 (RL) | 2.5 (RL)/2 (FH) | 2.5 (RL)/2 (FH) | |
Acquisition direction | Sagittal | Axial | Axial | |
Duration | 5 min 58 sec | 6 min 3 sec | 6 min 3 | |
Phase-difference fieldmap | ||||
Scan technique | n/a | n/a | 3D MPRAGE | |
Fat suppression | n/a | n/a | No | |
Coverage | n/a | n/a | Whole-brain | |
FOV (RL/AP/FH; mm) | n/a | n/a | 208 × 256 × 256 | |
Voxel size (mm) | n/a | n/a | 2 × 2 × 2 | |
TR/TE (ms) | n/a | n/a | 11/3 | |
Delta TE (ms) | n/a | n/a | 5 | |
Water-fat shift (pix) | n/a | n/a | 1.134 | |
Bandwidth (Hz/pix) | n/a | n/a | 383.0 | |
Flip angle (deg) | n/a | n/a | 8 | |
Phase accell. factor (SENSE) | n/a | n/a | 2.5 (RL)/2 (FH) | |
Acquisition direction | n/a | n/a | Axial | |
Duration | n/a | n/a | 1 min 44 | |
Functional (BOLD) MRI | MB scans** | Seq. scans** | ||
Number of scans | 1 | 2 | 3 | 4 |
Scan technique | GE-EPI | GE-EPI | GE-EPI | GE-EPI |
Coverage | Whole-brain | Whole-brain | Whole-brain | |
FOV (RL/AP/FH) | 138 × 192 × 192 | 240 × 240 × 118 | 240 × 240 × 122 | 240 × 240 × 122 |
Voxel size (mm.) | 3 × 3 × 3 | 3 × 3 × 3 | 3 × 3 × 3 | 3 × 3 × 3 |
Matrix size | 64 × 64 | 80 × 80 | 80 × 80 | 80 × 80 |
Nr. of slices | 40 | 36 | 37 | 37 |
Slice gap (mm.) | 0.3 | 0.3 | 0.3 | 0.3 |
TR/TE (ms.) | 2200/28 | 750/28 | 2000 | 28 |
Water-fat shift (pix.) | 11.575 | 11.001 | 11.502 | 11.502 |
Bandwidth (Hz/Pix) | 34.6 | 39.5 | 37.8 | 37.8 |
Flip angle (deg.) | 90 | 60 | 76.1 | 76.1 |
Phase accell. factor (SENSE) | 0 | 2 (AP) | 2 (AP) | 2 (AP) |
Phase encoding direction | P>> A | P>> A | P>> A | P>> A |
Multiband acceleration factor | n/a | 3 | n/a | n/a |
Multiband FOV shift | n/a | None | n/a | n/a |
Slice encoding direction | L>> R (sequential) | F>> H (sequential) | F>> H (sequential) | F>> H (sequential) |
Nr. of dummy scans | 2 | 2 | 2 | 2 |
Dynamic stabilization | none | enhanced | enhanced | enhanced |
Diffusion-weighted images | ||||
Number of scans | 3 | 1 | 1 | |
Scan technique | SE-DWI | SE-DWI | SE-DWI | |
Shell | Single | Single | Single | |
Nr. of b0 images | 1 | 1 | 1 | |
Nr. of diffusion-weighted dirs. | 32 | 32 | 32 | |
Sampling scheme | Half sphere | Half sphere | Half sphere | |
DWI b-value | 1000 s/mm2 | 1000 s/mm2 | 1000 s/mm2 | |
Coverage | Whole-brain (partial cerebellum) | Whole-brain (partial cerebellum) | Whole-brain (partial cerebellum) | |
FOV (RL/AP/FH) | 224 × 224 × 120 | 224 × 224 × 120 | 224 × 224 × 120 | |
Voxel size (mm.) | 2 × 2 × 2 | 2 × 2 × 2 | 2 × 2 × 2 | |
Matrix size | 112 × 112 | 112 × 112 | 112 × 112 | |
Nr. of slices | 60 | 60 | 60 | |
Slice gap (mm.) | 0 | 0 | 0 | |
TR/TE (ms.) | 6312***/74 | 7387***/86 | 7387***/86 | |
Water-fat shift (pix.) | 13.539 | 18.926 | 18.926 | |
Bandwidth (Hz/pix.) | 33.8 | 22.9 | 22.9 | |
Flip angle (deg.) | 90 | 90 | 90 | |
Phase accell. (SENSE) | 3 (AP) | 2 (AP) | 2 (AP) | |
Phase encoding dir. | P>> A | P>> A | P>> A | |
Slice encoding direction | F>> H | F>> H | F>> H | |
Duration | 4 min 49 sec | 5 min 27 sec | 5 min 27 sec |