Online-only Table 2 Batch information and quality control for bulk short-read RNA-sequencing samples.
GEO Accession ID | Sample Name in GEO | Cell sorting batch | cDNA preparation date | Qubit concentration (ng/ul) | cDNA peak (bp) | Sequencing lane | Fastq file Label | Cell type | Total reads (million) | Uniquely mapped reads (%) | Average mapped length | Q30 (%) | GC (%) | TIN (median) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SRR13861944 | p100_8 W_LT-HSC_1 | 20181212_batch1 | 20181213 | 7.9 | 1851 | 1 | 12-L4 | LT-HSC | 23.1 | 86.9 | 293.6 | 89.1 | 46.0 | 58.3 |
SRR13861888 | p100_8W_LT-HSC_2 | 20181218_batch1 | 20181219 | 13.5 | 1905 | 3 | 18-BM1-L2 | LT-HSC | 22.2 | 85.6 | 291.1 | 86.3 | 47.0 | 62.3 |
SRR13861877 | p100_8W_LT-HSC_3 | 20181218_batch2 | 20181219 | 16.6 | 1859 | 2 | 18-BM2-L1 | LT-HSC | 20.0 | 86.8 | 292.3 | 88.1 | 47.0 | 56.4 |
SRR13861850 | p100_8W_LT-HSC_4 | 20181226_batch1 | 20181227 | 9.3 | 1421 | 4 | 26-BM1-L3 | LT-HSC | 17.6 | 85.2 | 292.9 | 88.6 | 46.0 | 55.1 |
SRR13861823 | p100_8W_LT-HSC_5 | 20181226_batch2 | 20181227 | 7.4 | 1403 | 6 | 26-BM3-L1 | LT-HSC | 29.0 | 86.3 | 292.8 | 88.1 | 46.0 | 50.9 |
SRR13862073 | p100_8W_ST-HSC_1 | 20181212_batch1 | 20181213 | 7.5 | 1530 | 1 | 12-S1 | ST-HSC | 22.6 | 87.4 | 294.0 | 89.7 | 46.0 | 54.5 |
SRR13862061 | p100_8W_ST-HSC_2 | 20181218_batch1 | 20181219 | 14.0 | 1832 | 2 | 18-BM1-S2 | ST-HSC | 21.3 | 84.5 | 290.3 | 86.6 | 48.0 | 66.1 |
SRR13862033 | p100_8W_ST-HSC_3 | 20181218_batch2 | 20181219 | 20.4 | 1893 | 3 | 18-BM2-S2 | ST-HSC | 24.8 | 85.3 | 292.6 | 84.9 | 47.0 | 60.3 |
SRR13861919 | p100_8W_ST-HSC_4 | 20181226_batch1 | 20181227 | 11.1 | 1297 | 4 | 26-BM1-S2 | ST-HSC | 24.0 | 83.5 | 291.1 | 87.0 | 45.0 | 49.4 |
SRR13861908 | p100_8W_ST-HSC_5 | 20181226_batch2 | 20181227 | 6.6 | 1383 | 6 | 26-BM3-S1 | ST-HSC | 26.3 | 84.8 | 291.5 | 87.2 | 45.5 | 51.4 |
SRR13861812 | p100_8W_MPP_1 | 20181212_batch1 | 20181213 | 6.6 | 1298 | 1 | 12-M1 | MPP | 19.9 | 86.8 | 293.5 | 89.0 | 46.5 | 57.1 |
SRR13861801 | p100_8W_MPP_2 | 20181218_batch1 | 20181219 | 8.9 | 1882 | 3 | 18-BM1-M2 | MPP | 18.4 | 85.3 | 291.3 | 87.3 | 47.0 | 62.2 |
SRR13861774 | p100_8W_MPP_3 | 20181218_batch2 | 20181219 | 14.5 | 1908 | 2 | 18-BM2-M2 | MPP | 27.8 | 83.0 | 290.7 | 85.8 | 46.5 | 63.3 |
SRR13861763 | p100_8W_MPP_4 | 20181226_batch1 | 20181227 | 8.7 | 1320 | 4 | 26-BM1-M1 | MPP | 24.7 | 83.8 | 291.9 | 88.2 | 45.0 | 52.5 |
SRR13861752 | p100_8W_MPP_5 | 20181226_batch2 | 20181227 | 8.0 | 1361 | 6 | 26-BM3-M1 | MPP | 26.8 | 84.3 | 292.0 | 87.8 | 45.0 | 53.2 |
