Table 2 Annotation of protein-coding genes and repetitive sequences.
From: Chromosome-scale genome assembly of the high royal jelly-producing honeybees
Protein-coding genes | |||
Total gene number | 12,288 | ||
BUSCO completeness | 97% | ||
Number of genes with a GO term | 6,615 | ||
Number of genes with a protein domain | 8,614 | ||
Repetitive sequences | |||
TE superfamily | Length occupied (bp) | Percent of genome | |
DNA transposons | TcMar | 3557056 | 1.67 |
hAT | 14338 | 0.01 | |
non-LTR retrotransposons | CR1 | 952652 | 0.45 |
R2 | 49376 | 0.02 | |
LTR retrotransposons | Copia | 6014 | 0.00 |
Gypsy | 383280 | 0.18 | |
Total TEs | 4962716 | 2.15 | |
Other repeats | 13761592 | 5.96 | |
Total repeats | 18724308 | 8.11 | |
