Table 1 Summary of reads, contigs, MAGs and viral contigs of PRE metagenomes.
From: A holistic genome dataset of bacteria, archaea and viruses of the Pearl River estuary
Station | Size-fraction | Raw read pairs | Read pairs after QC | Contigs (>1 kb) | Prokaryotic MAGs* | Viral contigs (>5 kb) |
|---|---|---|---|---|---|---|
PRE-S01 | 0.7–2.7 μm | 442,832,413 | 249,009,883 | 1,497,910 | 256 | 7,539 |
0.22–0.7 μm | 408,434,124 | 297,683,700 | 1,155,059 | 178 | 9,479 | |
<0.22 μm | 81,475,964 | 66,065,092 | 114,587 | Not Applicable | 1,373 | |
PRE-S09 | 0.7–2.7 μm | 449,343,573 | 320,412,019 | 1,330,764 | 239 | 5,027 |
0.22–0.7 μm | 477,408,408 | 299,346,960 | 1,300,578 | 204 | 10,069 | |
<0.22 μm | 18,803,045 | 15,540,200 | 26,853 | Not Applicable | 430 | |
PRE-S17 | 0.7–2.7 μm | 461,596,030 | 322,152,520 | 920,756 | 191 | 3,316 |
0.22–0.7 μm | 472,049,471 | 312,545,342 | 702,047 | 134 | 9,404 | |
<0.22 μm | 22,655,869 | 18,478,415 | 31,626 | Not Applicable | 1,043 | |
PRE-S21 | 0.7–2.7 μm | 462,296,138 | 319,291,227 | 945,976 | 182 | 5,025 |
0.22–0.7 μm | 475,167,759 | 306,620,589 | 929,998 | 143 | 16,029 | |
<0.22 μm | 21,784,687 | 17,794,588 | 48,363 | Not Applicable | 1,919 | |
PRE-S25 | 0.7–2.7 μm | 462,183,037 | 292,078,554 | 1,160,660 | 182 | 6,963 |
0.22–0.7 μm | 467,795,025 | 295,708,591 | 1,001,020 | 169 | 12,710 | |
<0.22 μm | 19,058,316 | 15,808,251 | 48,012 | Not Applicable | 2,258 |
