Table 1 Detailed QC of FASTQ files.
From: Single-cell RNA sequencing of adult rat testes after Leydig cell elimination and restoration
Sample ID | Number of Reads (K) | Valid Barcodes (%) | Q20 Bases in RNA Read (%) | Q30 Bases in RNA Read (%) | GC Content (%) | Reads Mapped Confidently to Genome (%) | Reads Mapped Confidently to Exonic Regions (%) | Reads Mapped Confidently to Transcriptome(%) |
|---|---|---|---|---|---|---|---|---|
C | 592,752 | 97.0 | 95.5 | 89.8 | 46.9 | 87.3 | 63.8 | 57.3 |
E1W | 540,734 | 96.7 | 95.8 | 90.3 | 47.0 | 97.3 | 63.8 | 57.1 |
E3W | 569,130 | 96.8 | 95.4 | 89.5 | 47.2 | 87.4 | 64.3 | 57.5 |
E7W | 566,156 | 96.7 | 95.4 | 89.6 | 47.4 | 87.8 | 64.7 | 57.5 |
