Table 1 Detailed information for five participating ctDNA assays.
From: Ultra-deep sequencing data from a liquid biopsy proficiency study demonstrating analytic validity
Panel code | Vendor | ctDNA assay | Laboratory code | |
|---|---|---|---|---|
BRP | Burning Rock Biotech | Lung Plasma v4 | ST25, ST26 | |
IDT | Integrated DNA Technologies | xGen Non-small Cell Lung Cancer | ST04, ST05, ST06 | |
ILM | Illumina | TruSight Tumor 170 + UMI | ST10, ST23, ST29 | |
ROC | Roche Sequencing Solutions | AVENIO ctDNA (Expanded Kit) | ST10, ST20, ST21 | |
TFS | Thermo Fisher Scientific | Oncomine Lung cfDNA assay | ST22, ST23, ST24 | |
Panel code | Sequencing platform | Read length (bp) | Target genes | Reportable region (kb) |
BRP | Illumina NovaSeq 6000 | 2 × 151 | 168 | 226.9 |
IDT | Illumina NovaSeq 6000 | 2 × 151 | 24 | 110.1 |
ILM | Illumina NovaSeq 6000 | 2 × 151 | 154 | 501 |
ROC | Illumina NextSeq 500 | 2 × 151 | 77 | 161.7 |
TFS | Ion Torrent S5 XL | 11 | 1.9 | |
