Table 3 Minimum, maximum, median and average sequencing read counts per genotype characterized with genotyping-by-sequencing (GBS) or whole-genome sequencing (WGS, 3-fold coverage).

From: Large-scale genotyping and phenotyping of a worldwide winter wheat genebank for its use in pre-breeding

Reads

GBS (8,070 genotypes)

Minimum

Median

Average

Maximum

Alla

778,809

2,406,622

2,637,070.2

27,663,505

Mapped

Total

757,460

2,369,798.5

2,591,115.5

27,296,923

>q1

576,566

1,798,418.5

1,962,639.1

20,679,706

>q20

481,039

1,486,933

1,623,899

17,034,192

>q30

415,903

1,284,438.5

1,402,438

14,765,665

 

WGS (768 genotypes)

All

56,358,130

346,951,848

354,818,926.3

1,015,707,996

Mapped

Total

55,439,721

341,737,943

349,082,726.1

999,714,679

>q10

27,616,390

178,233,289.5

178,555,659.1

473,928,110

>q20

25,815,724

166,330,159.5

166,505,569.7

439,321,203

>q30

24,084,200

154,655,202

154,777,065.9

406,186,889

  1. Read counts are presented according to different minimum read mapping quality (q) levels.
  2. aAfter trimming.
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