Table 4 Repeat annotation in the T. sibiricus genome.
From: Chromosome-level genome assembly of the Siberian chipmunk (Tamias sibiricus)
Type | Repbase TEs | De novo | Combined TEs | |||
|---|---|---|---|---|---|---|
Length (bp) | % in genome | Length (bp) | % in genome | Length (bp) | % in genome | |
DNA | 53,133,841 | 2.01 | 39,586,199 | 1.49 | 71,847,885 | 2.71 |
LINE | 295,324,720 | 11.17 | 411,023,963 | 15.54 | 492,793,770 | 18.63 |
SINE | 189,520,761 | 7.16 | 174,837,800 | 6.61 | 235,352,375 | 8.90 |
LTR | 186,959,109 | 7.07 | 191,683,096 | 7.25 | 267,510,391 | 10.11 |
Unknown | 2,074,690 | 0.07 | 37,565,203 | 1.42 | 39,637,495 | 1.49 |
Total | 815,650,790 | 30.85 | 82,3843,171 | 31.16 | 1,027,834,241 | 38.87 |
