Table 2 Statistics on edges in PrimeKG.
From: Building a knowledge graph to enable precision medicine
Relation type | Count | Percent (%) |
|---|---|---|
Anatomy - Protein (present) | 3,036,406 | 37.5 |
Drug - Drug | 2,672,628 | 33.0 |
Protein - Protein | 642,150 | 7.9 |
Disease - Phenotype (positive) | 300,634 | 3.7 |
Biological process - Protein | 289,610 | 3.6 |
Cellular component - Protein | 166,804 | 2.1 |
Disease - Protein | 160,822 | 2.0 |
Molecular function - Protein | 139,060 | 1.7 |
Drug - Phenotype | 129,568 | 1.6 |
Biological process - Biological process | 105,772 | 1.3 |
Pathway - Protein | 85,292 | 1.1 |
Disease - Disease | 64,388 | 0.8 |
Drug - Disease (contraindication) | 61,350 | 0.8 |
Drug - Protein | 51,306 | 0.6 |
Anatomy - Protein (absent) | 39,774 | 0.5 |
Phenotype - Phenotype | 37,472 | 0.5 |
Anatomy - Anatomy | 28,064 | 0.3 |
Molecular function - Molecular function | 27,148 | 0.3 |
Drug - Disease (indication) | 18,776 | 0.2 |
Cellular component - Cellular component | 9,690 | 0.1 |
Phenotype - Protein | 6,660 | 0.1 |
Drug - Disease (off-label use) | 5,136 | 0.1 |
Pathway - Pathway | 5,070 | 0.1 |
Exposure - Disease | 4,608 | 0.1 |
Exposure - Exposure | 4,140 | 0.1 |
Exposure - Biological process | 3,250 | <0.1 |
Exposure - Protein | 2,424 | <0.1 |
Disease - Phenotype (negative) | 2,386 | <0.1 |
Exposure - Molecular function | 90 | <0.1 |
Exposure - Cellular component | 20 | <0.1 |
Total | 8,100,498 | 100.0 |
