Table 7 The detailed repetitive elements in the genome.
From: A chromosome-level genome assembly of the Asian giant softshell turtle Pelochelys cantorii
Type | Number | Length(bp) | Rate(%) |
|---|---|---|---|
ClassI | 4,336,455 | 849,960,593 | 39.33 |
ClassI/DIRS | 195,999 | 69,660,382 | 3.22 |
ClassI/LARD | 1,308,272 | 249,747,120 | 11.56 |
ClassI/LINE | 1,706,636 | 416,261,004 | 19.26 |
ClassI/LTR/Copia | 2,472 | 316,980 | 0.01 |
ClassI/LTR/Gypsy | 218,444 | 71,392,354 | 3.30 |
ClassI/LTR/Unknown | 76,570 | 28,881,350 | 1.34 |
ClassI/PLE | 813,859 | 189,340,452 | 8.76 |
ClassI/SINE | 11,040 | 1,726,075 | 0.08 |
ClassI/TRIM | 2,411 | 671,971 | 0.03 |
ClassI/Unknown | 752 | 97,976 | 0.00 |
ClassII | 886,516 | 207,678,021 | 9.61 |
ClassII/Crypton | 474 | 29,960 | 0.00 |
ClassII/Helitron | 5,087 | 543,116 | 0.03 |
ClassII/MITE | 48,753 | 11,607,987 | 0.54 |
ClassII/Maverick | 5,558 | 1,356,319 | 0.06 |
ClassII/TIR | 803,189 | 193,576,676 | 8.96 |
ClassII/Unknown | 23,455 | 2,007,591 | 0.09 |
PotentialHostGene | 9,085 | 1,674,363 | 0.08 |
SSR | 355 | 62,966 | 0.00 |
Unknown | 294,771 | 53,639,334 | 2.48 |
Total | 5,527,182 | 993,573,618 | 45.98 |
