Table 4 Statistics for annotated Pogonophryne albipinna transposable elements.
Class | Number of elements | Length occupied (bp) | Percentage of sequence (%) |
|---|---|---|---|
SINEs: | 20,523 | 3,063,718 | 0.29% |
MIRs | 13,231 | 2,031,457 | 0.19% |
LINEs: | 174,171 | 59,316,996 | 5.50% |
LINE1 | 4,887 | 1,339,549 | 0.12% |
LINE2 | 110,647 | 43,014,081 | 4.00% |
LTR elements: | 471,673 | 192,373,177 | 17.91% |
Gypsy | 138,972 | 60,560,082 | 5.64% |
DIRSs | 10,542 | 6,693,107 | 0.62% |
RC: Helitrons | 10,174 | 5,687,850 | 0.53% |
DNA elements: | 531,943 | 165,424,411 | 15.38% |
hAT-Ac | 141,912 | 43,112,186 | 4.01% |
Unclassified: | 431,689 | 90,165,374 | 8.39% |
Total interspersed repeats: | 1,640,173 | 516,031,526 | 48.03% |
Low complexity: | 24,782 | 1,477,563 | 0.14% |
Satellites: | 11,185 | 2,123,109 | 0.20% |
Simple repeats: | 277,977 | 24,329,247 | 2.26% |
Ribosomal RNAs: | 286 | 30,590 | 0.00% |
Small nuclear RNAs: | 511 | 169,931 | 0.02% |
Transfer RNAs: | 1,822 | 389,123 | 0.04% |
Total bases masked: | 1,956,736 | 544,551,089 | 50.68% |
