Table 2 Assembly statistics of three Tokudaia species genomes.
| Â | T. osimensis | T. tokunoshimensis | T. muenninki |
|---|---|---|---|
2n = 25, XO/XO | 2n = 25, XO/XO | 2n = 44, XX/XY | |
Genome assembly statistics | |||
 #Scaffolds | 124 | 160 | 1,528 |
 #Chromosome-level scaffolds | 13 | 23 | 23 |
 #unplaced scaffolds | 110 | 136 | 1,504 |
 #mitochondrial DNA contig | 1 | 1 | 1 |
 Total scaffold length (bp) | 2,445,315,397 | 2,477,310,555 | 2,660,819,200 |
 Total Chr.-level scaffold length (bp) | 2,440,098,537 | 2,473,996,358 | 2,429,465,518 |
 Anchored to chromosome (%) | 99.79 | 99.87 | 91.31 |
 Longest scaffold (bp) | 269,377,760 | 179,766,896 | 175,831,743 |
 Contig N50 (bp) | 8,462,634 | 13,597,559 | 19,740,843 |
 Contig L50 | 88 | 57 | 34 |
 Scaffold N50 (bp) | 234,036,378 | 125,076,325 | 121,843,864 |
 Scaffold L50 | 5 | 9 | 10 |
 Gaps (bp) | 270,541 | 205,000 | 125,000 |
BUSCO evaluation (v5.4.7, genome mode, glires_odb10) | |||
 Complete BUSCOs (%) | 96.15 | 96.14 | 96.30 |
 single-copy BUSCOs (%) | 94.97 | 94.81 | 95.20 |
 duplicated BUSCOs (%) | 1.18 | 1.33 | 1.10 |
 Fragmented BUSCOs (%) | 0.74 | 0.82 | 0.64 |
 Missing BUSCOs (%) | 3.11 | 3.04 | 3.06 |
Merqury evaluation | |||
 Completeness | 93.71 | 93.72 | 93.14 |
 QV | 45.21 | 47.85 | 45.32 |
