Table 3 Gene annotation statistics of three Tokudaia species genomes.
| Â | T. osimensis | T. tokunoshimensis | T. muenninki | (M. musculus) | (R. norvegicus) |
|---|---|---|---|---|---|
Predicted genes statistcs | |||||
#Gene | 22,233 | 22,106 | 22,240 | 22,173 | 22,215 |
 #Single exon genes | 3,114 | 2,985 | 2,983 | 3,766 | 4,073 |
 Total exon + intron length (bp) | 825,581,176 | 832,857,796 | 823,145,008 | 848,421,758 | 843,812,967 |
 Mean exon + intron length (bp) | 37,133.1 | 37,675.6 | 37,011.9 | 38,263.7 | 37,983.9 |
#Exons | 199,034 | 198,638 | 199,682 | 201,287 | 200,148 |
 #Exons per gene | 8.95 | 8.99 | 8.98 | 9.08 | 9.01 |
 Total exon length (bp) | 35,267,016 | 35,143,527 | 35,354,169 | 36,662,602 | 36,311,498 |
 Mean exon length (bp) | 177.2 | 176.9 | 177.1 | 182.1 | 181.4 |
#CDSs | 22,233 | 22,106 | 22,240 | 22,173 | 22,215 |
 Total CDS length (bp) | 35,267,016 | 35,143,527 | 35,354,169 | 36,662,602 | 36,311,498 |
 Mean CDS length (bp) | 1,586.3 | 1,589.8 | 1,589.7 | 1,653.5 | 1,634.6 |
#Intron | 176,801 | 176,532 | 177,442 | 179,114 | 177,933 |
 Total intron length (bp) | 790,314,160 | 797,714,269 | 787,790,839 | 811,759,156 | 807,501,469 |
 Mean intron length (bp) | 4,470.1 | 4,518.8 | 4,439.7 | 4,532.1 | 4,538.2 |
%GT–AG splice sites | 99.04 | 99.04 | 99.02 | 98.95 | 98.09 |
BUSCO evaluation (v5.4.7, protein mode, glires_odb10) | |||||
Complete BUSCOs (%) | 98.70 | 98.80 | 99.01 | 99.47 | 98.76 |
 single-copy BUSCOs (%) | 98.08 | 98.01 | 98.36 | 98.63 | 97.23 |
 duplicated BUSCOs (%) | 0.62 | 0.80 | 0.65 | 0.84 | 1.53 |
Fragmented BUSCOs (%) | 0.32 | 0.30 | 0.20 | 0.16 | 0.36 |
Missing BUSCOs (%) | 0.98 | 0.90 | 0.79 | 0.37 | 0.88 |
