Table 2 Summary of repeat contents in A. tanguticus.
From: Chromosome level genome assembly of endangered medicinal plant Anisodus tanguticus
Type | TE proteins | De novo + Repbase | Combined TEs | |||
|---|---|---|---|---|---|---|
Length (bp) | Ratio (%) | Length (bp) | Ratio (%) | Length (bp) | Ratio (%) | |
DNA | 2,777,268 | 0.22 | 112,613,118 | 8.92 | 112,839,725 | 8.94 |
LINE | 17,913,877 | 1.42 | 43,874,441 | 3.48 | 48,309,924 | 3.83 |
SINE | 0 | 0.00 | 2,595,535 | 0.21 | 2,595,535 | 0.21 |
LTR | 257,802,593 | 20.42 | 550,850,320 | 43.63 | 561,967,312 | 44.51 |
LTR-Gypsy | 50,267,778 | 3.98 | 199,921,575 | 15.83 | 204,019,329 | 16.16 |
LTR-Copia | 198,781,093 | 15.74 | 327,343,555 | 25.93 | 331,645,793 | 26.27 |
Satellite | 0 | 0.00 | 915,584 | 0.07 | 915,584 | 0.07 |
Other | 591 | 0.00 | 3,315 | 0.00 | 3,906 | 0.00 |
Unknown | 17,115 | 0.00 | 123,903,677 | 9.81 | 123,920,792 | 9.82 |
Total | 278,491,062 | 22.06 | 815,145,898 | 64.56 | 842,143,897 | 66.70 |
