Table 1 Comparison of the Pampus genome assemblies in this study and the study of AlMomin et al.20.
From: Chromosome-level genome assembly of the silver pomfret Pampus argenteus
This study | AlMomin et al.20 | |
|---|---|---|
Technologies | Illumina + PacBio CCS | Illumina |
Clean data (Gb) | 75.52 (Illumina) | 76.43 (Illumina) |
63.80 (PacBio) | ||
Coverage | 145.77 (Illumina) | 58 × (Illumina) |
123.15 × (PacBio) | ||
Hi-C clean data (Gb) | 138.39 | — |
Genome size (Mb) | 518.06 | 350.05 |
Repeat rate (%) | 13.57 | 11.06 |
GC content (%) | 40.15 | 38.82 |
# Chromosomes | 24 | — |
Chromosome size (Mb) | 9.80–27.75 | — |
# Contigs | 74 | 2,097,109 |
Total length (Mb) | 518.04 | 694.94 |
Contig N50 (Mb) | 20.47 | 0.0005 |
Contig Max (Mb) | 25.41 | 0.0186 |
Average Length (Mb) | 7.00 | 0.0003 |
# Scaffolds | 166 | 298,141 |
Total length (Mb) | 518.06 | 350.06 |
Scaffold N50 (Mb) | 22.86 | 0.0016 |
Scaffold Max (Mb) | 27.75 | 0.0331 |
Average Length (Mb) | 3.12 | 0.0012 |
# Protein coding genes | 24,696 | 16,322 |
Average gene length (bp) | 14137.19 | 1,890.19 |
# non-coding genes | 13,473 | 1,085 |
tRNAs | 10,650 | 203 |
rRNAs | 634 | 187 |
miRNAs | 1,514 | 443 |
snRNAs | 675 | 252 |
