Table 9 Software for metagenomic analysis.

MEGAHIT

v1.1.2

https://github.com/voutcn/megahit

Prodigal

v2.6.3

https://github.com/hyattpd/Prodigal

CD-HIT

v4.6.1

http://weizhongli-lab.org/cd-hit/

SOAPaligner

soap2.21release

https://github.com/ShujiaHuang/SOAPaligner

CAZy

v8

http://bcb.unl.edu/dbCAN2/download/Databases/

ARDB

v1.1

http://ardb.cbcb.umd.edu/

CARD

v3.0.9

https://card.mcmaster.ca

VFDB

v20200703

http://www.mgc.ac.cn/VFs/main.htm

Diamond

v0.8.35

https://github.com/bbuchfink/diamond

HMMER

v3.1b2

http://hmmer.org/

Fastp

v0.23.0

https://github.com/OpenGene/fastp

Diamond

v2.0.13

https://github.com/bbuchfink/diamond

NR

nr_202109

https://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/

COG

2020

http://eggnog5.embl.de/#/app/downloads

KEGG

202109

https://www.genome.jp/kegg